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Lsi11G006650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G006650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr11:7000011..7000268
RNA-Seq ExpressionLsi11G006650
SyntenyLsi11G006650
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035003.1 hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa]3.0e-1154.12Show/hide
Query:  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
        N RQK+  S    FSIF  FKSR GR+  +   +      M  + KVWPSD DK  HWVAEPGIDRKAK YID+I Y+ R FE+E
Subjt:  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE

KAA0056089.1 hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa]3.2e-3485.88Show/hide
Query:  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
        MASSANNKRQKRPKS SC FSIFGLFKSRDG +R DD MTM+DTRKVWPSDGDKGRHWVAEPGIDRKAKAYI+KIH+QIRS E +
Subjt:  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE

KAG6586063.1 hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2574.7Show/hide
Query:  SSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
        +S NNKRQK PKSPSC+FSIF LF+SRD R+RRD+  T++D RKVWPSD D+ R+WVAEPGIDRKAKAYIDKIH QIRS  TE
Subjt:  SSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE

KAG6599163.1 hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia]5.2e-2475.31Show/hide
Query:  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRR-RDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIR
        MASS  N  +++PKSPSC FSI  LFKSR  R+R  DD + MEDTRKVWPSD DKGRHWVAEPGIDRKAKAYID+IHYQIR
Subjt:  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRR-RDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIR

XP_021898970.1 uncharacterized protein LOC110815469 [Carica papaya]1.6e-1266.67Show/hide
Query:  RPKSPSCWFSIFGLFKSRDGRRRRDDTMT-MEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH
        R K  S  FSIFGLFKSR   RR  D  T ++DTRKVWPSD DK R+WVAEPGIDRKA A+I K H
Subjt:  RPKSPSCWFSIFGLFKSRDGRRRRDDTMT-MEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH

TrEMBL top hitse value%identityAlignment
A0A0A0K8W0 Uncharacterized protein1.6e-1053.66Show/hide
Query:  RQKRPKSPSCWFSIFGLFKSRDGRR-----RRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
        RQK+  S    FSIF  FKS+ GR+        +   +  + KVWPSD DKG  WVAEPGIDRKAK YID+I Y+ R FETE
Subjt:  RQKRPKSPSCWFSIFGLFKSRDGRR-----RRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE

A0A0A0KAK6 Uncharacterized protein5.4e-1152.94Show/hide
Query:  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
        N RQK+  +    FSIF  FKSR GR+      +      M  + KVWPSD DK  HWVAEPGIDRKAK YID+I Y+ R FE+E
Subjt:  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE

A0A0A0LJ24 Uncharacterized protein3.0e-3383.53Show/hide
Query:  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
        MASSANNKRQKR KS SC FSIF LFKSRDG +R DD MTM+DTRKVWPSDGDKGRHWVAEPGIDRKAKAYI+KIH+QIRS +T+
Subjt:  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE

A0A5A7SWT9 Uncharacterized protein1.4e-1154.12Show/hide
Query:  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
        N RQK+  S    FSIF  FKSR GR+  +   +      M  + KVWPSD DK  HWVAEPGIDRKAK YID+I Y+ R FE+E
Subjt:  NKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMT------MEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE

A0A5D3BDY2 Uncharacterized protein1.6e-3485.88Show/hide
Query:  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE
        MASSANNKRQKRPKS SC FSIFGLFKSRDG +R DD MTM+DTRKVWPSDGDKGRHWVAEPGIDRKAKAYI+KIH+QIRS E +
Subjt:  MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G05858.1 unknown protein5.6e-0853.33Show/hide
Query:  FSIFGLFKSRDGRRRRDDTMTMED---TRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH
        FS+F  FK+R   R   D  + +D   TRK   SD DK R+WVAEPGIDRKA A+I K H
Subjt:  FSIFGLFKSRDGRRRRDDTMTMED---TRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH

AT5G26620.1 unknown protein3.6e-0772.73Show/hide
Query:  TRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH
        TRK W SD DK R+WVAEPGIDRKA A+I K H
Subjt:  TRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCATCAGCCAACAACAAGAGACAAAAGCGCCCGAAGTCGCCCTCGTGTTGGTTCTCGATCTTCGGCTTGTTCAAGTCTCGAGATGGTAGAAGGAGGCGGGACGA
TACGATGACGATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACATTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATA
AGATCCATTATCAAATCCGCTCCTTCGAAACTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCATCAGCCAACAACAAGAGACAAAAGCGCCCGAAGTCGCCCTCGTGTTGGTTCTCGATCTTCGGCTTGTTCAAGTCTCGAGATGGTAGAAGGAGGCGGGACGA
TACGATGACGATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACATTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATA
AGATCCATTATCAAATCCGCTCCTTCGAAACTGAATGA
Protein sequenceShow/hide protein sequence
MASSANNKRQKRPKSPSCWFSIFGLFKSRDGRRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSFETE