CuGenDBv2

Gene ID	Lsi11G007520
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Chlorophyll A-B binding protein
Genome location	chr11:8446253..8451238
RNA-Seq Expression	Lsi11G007520
Synteny	Lsi11G007520
Gene Ontology terms	GO:0009507 - chloroplast (cellular component) GO:0009579 - thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR023329 - Chlorophyll a/b binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008451793.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo]

1.2e-62

60.83

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Query:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF
        MWA EIYKWIS H R   TLEM  AS +LILPI G NLPPSQYLSFRH+HPSATFSR+                                          
Subjt:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF

Query:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
                                   GWSRDQ+ G+ THRTRGQAF+ISN    SP KDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
Subjt:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI

Query:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR
        NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSI+INFFIR
Subjt:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR

XP_011648927.1 uncharacterized protein LOC101212671 [Cucumis sativus]

3.7e-59

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Query:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF
        MWA +IYKWIS H   R TL+M  ASTALILPI G NLPPSQYLSFRHT PSATFSR+                                          
Subjt:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF

Query:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
                                   GWSRD  AG+ T RTRGQAF+ISN    SPG+DGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
Subjt:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI

Query:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR
        NGAWAMIGLTAGLVIEG+TGKGILAQLADYFSI+INFFIR
Subjt:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR

XP_016902490.1 PREDICTED: uncharacterized protein LOC103492970 isoform X2 [Cucumis melo]

4.9e-56

57.08

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Query:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF
        MWA EIYKWIS H R   TLEM  AS +LILPI G NLPPSQYLSFRH+HPSATFSR+                                          
Subjt:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF

Query:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
                                   GWSRDQ+ G+ THRTRGQAF+ISN              VIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
Subjt:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI

Query:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR
        NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSI+INFFIR
Subjt:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR

XP_022969695.1 uncharacterized protein LOC111468645 isoform X1 [Cucurbita maxima]

1.9e-47

53.92

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Query:  MASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMST
        MASTALILPI G N   SQ LSFRHTH SATFSR                                                                  
Subjt:  MASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMST

Query:  RIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI
           WGWSRD++ G  THRTRGQAF+I      SPGKD LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGI
Subjt:  RIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI

Query:  LAQLADYFSIIINFFIR
        LAQLA Y + ++NFF+R
Subjt:  LAQLADYFSIIINFFIR

XP_038889814.1 uncharacterized protein LOC120079625 [Benincasa hispida]

6.7e-53

59.72

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Query:  MASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMST
        MAST+LILPIKG NLPPSQYLSFRHTHPSATFSR                                                                  
Subjt:  MASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMST

Query:  RIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI
            GWSRDQ+ G+ THRTRGQAFQISN    SPGKD LIKQVIMVDPLEAKR+AAKEMEKIKAKEKFKR+RQIEAINGAWAMIGLTAGLVIEGQTGKGI
Subjt:  RIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI

Query:  LAQLADYFSIIINFFI
        LAQL  YFS +INFFI
Subjt:  LAQLADYFSIIINFFI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH95 Uncharacterized protein

1.8e-59

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Query:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF
        MWA +IYKWIS H   R TL+M  ASTALILPI G NLPPSQYLSFRHT PSATFSR+                                          
Subjt:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF

Query:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
                                   GWSRD  AG+ T RTRGQAF+ISN    SPG+DGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
Subjt:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI

Query:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR
        NGAWAMIGLTAGLVIEG+TGKGILAQLADYFSI+INFFIR
Subjt:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR

A0A1S3BSE0 uncharacterized protein LOC103492970 isoform X1

5.9e-63

60.83

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Query:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF
        MWA EIYKWIS H R   TLEM  AS +LILPI G NLPPSQYLSFRH+HPSATFSR+                                          
Subjt:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF

Query:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
                                   GWSRDQ+ G+ THRTRGQAF+ISN    SP KDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
Subjt:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI

Query:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR
        NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSI+INFFIR
Subjt:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR

A0A1S4E3D1 uncharacterized protein LOC103492970 isoform X2

2.4e-56

57.08

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Query:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF
        MWA EIYKWIS H R   TLEM  AS +LILPI G NLPPSQYLSFRH+HPSATFSR+                                          
Subjt:  MWAPEIYKWISFHVRTRFTLEM--ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCF

Query:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
                                   GWSRDQ+ G+ THRTRGQAF+ISN              VIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
Subjt:  VWIHTLTKTFTFFDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI

Query:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR
        NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSI+INFFIR
Subjt:  NGAWAMIGLTAGLVIEGQTGKGILAQLADYFSIIINFFIR

A0A5A7UQ54 Uncharacterized protein

1.6e-47

57.28

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Query:  ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMSTR
        AS +LILPI G NLPPSQYLSFRH+HPSATFSR+                                                                  
Subjt:  ASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMSTR

Query:  IGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGIL
           GWSRDQ+ G+ THRTRGQAF+ISN    SP KDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGIL
Subjt:  IGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGIL

Query:  AQLADY
        AQ+  Y
Subjt:  AQLADY

A0A6J1I0N1 uncharacterized protein LOC111468645 isoform X1

9.1e-48

53.92

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Query:  MASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMST
        MASTALILPI G N   SQ LSFRHTH SATFSR                                                                  
Subjt:  MASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTFFDTLAFQMMST

Query:  RIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI
           WGWSRD++ G  THRTRGQAF+I      SPGKD LIK+VIMVDPLEAKR+AAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL++EGQTGKGI
Subjt:  RIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI

Query:  LAQLADYFSIIINFFIR
        LAQLA Y + ++NFF+R
Subjt:  LAQLADYFSIIINFFIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G28025.1 unknown protein

2.8e-25

53.6

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Query:  FQMMSTRIGWGWSRDQNAGKCTHRTR-GQAFQISNCSTA---SPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL
        F + S+ +  G  R Q+A    +R R G    ++N + +    PGK  + K+VIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GL
Subjt:  FQMMSTRIGWGWSRDQNAGKCTHRTR-GQAFQISNCSTA---SPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGL

Query:  VIEGQTGKGILAQLADYFSIIINFF
        VIE QTGKGILAQLA Y+S +++ F
Subjt:  VIEGQTGKGILAQLADYFSIIINFF

AT4G28025.2 unknown protein.

6.3e-25

56.52

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Query:  GWSRDQNAGKCTHRTR-GQAFQISNCSTA---SPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI
        G  R Q+A    +R R G    ++N + +    PGK  + K+VIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGKGI
Subjt:  GWSRDQNAGKCTHRTR-GQAFQISNCSTA---SPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGI

Query:  LAQLADYFSIIINFF
        LAQLA Y+S +++ F
Subjt:  LAQLADYFSIIINFF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGGGCACCTGAAATCTATAAATGGATAAGTTTTCATGTAAGAACCCGCTTCACTTTGGAGATGGCTTCCACTGCGCTGATTCTCCCCATCAAAGGACGGAACCTTCC
GCCTTCTCAGTACCTGTCTTTCCGCCATACCCATCCTTCTGCTACTTTCTCCAGAGTCAACCCCCAGCTGAATTATATCCTCACTAATAGAGTCGGGAAACCACCACTGC
AAGCTGAAAGTCTGGAAAAGATTAGCCCAATGGCTACTGGCGACAGCACAGTCAGATCATTAGTATTTTGTTTTGTTTGGATACACACCCTCACGAAAACTTTCACCTTC
TTCGACACCTTGGCTTTTCAAATGATGTCAACTAGGATCGGGTGGGGTTGGAGTAGGGACCAAAATGCTGGCAAATGTACTCACAGAACGAGGGGTCAAGCATTTCAAAT
CTCTAATTGTAGTACAGCCTCTCCTGGTAAAGATGGCTTAATCAAGCAGGTGATTATGGTTGACCCTTTGGAAGCCAAACGTATGGCAGCAAAAGAAATGGAAAAGATCA
AAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTGACAGCAGGGCTTGTTATCGAAGGTCAAACCGGAAAAGGC
ATTCTAGCACAGTTGGCCGACTACTTCAGCATCATTATCAACTTCTTCATACGGTAG

mRNA sequence

Show/hide mRNA sequence

ACTGGCTCTGTACAGCCAGCGATGAGAACTATTACACAAATGTCATTCTCCGGAAGATAAAGTGTCGATGTGGGCACCTGAAATCTATAAATGGATAAGTTTTCATGTAA
GAACCCGCTTCACTTTGGAGATGGCTTCCACTGCGCTGATTCTCCCCATCAAAGGACGGAACCTTCCGCCTTCTCAGTACCTGTCTTTCCGCCATACCCATCCTTCTGCT
ACTTTCTCCAGAGTCAACCCCCAGCTGAATTATATCCTCACTAATAGAGTCGGGAAACCACCACTGCAAGCTGAAAGTCTGGAAAAGATTAGCCCAATGGCTACTGGCGA
CAGCACAGTCAGATCATTAGTATTTTGTTTTGTTTGGATACACACCCTCACGAAAACTTTCACCTTCTTCGACACCTTGGCTTTTCAAATGATGTCAACTAGGATCGGGT
GGGGTTGGAGTAGGGACCAAAATGCTGGCAAATGTACTCACAGAACGAGGGGTCAAGCATTTCAAATCTCTAATTGTAGTACAGCCTCTCCTGGTAAAGATGGCTTAATC
AAGCAGGTGATTATGGTTGACCCTTTGGAAGCCAAACGTATGGCAGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGAAGACGTCAAATAGAAGCGAT
TAATGGAGCATGGGCAATGATTGGTCTGACAGCAGGGCTTGTTATCGAAGGTCAAACCGGAAAAGGCATTCTAGCACAGTTGGCCGACTACTTCAGCATCATTATCAACT
TCTTCATACGGTAGAGACATCTTCAAGGGGCAAAGGAGAAGTCCTTGAATGAAAAGAGTTATGCTCTTCTCGACTCTTGTAGCAAGTTTTTTTTGCTTGTTTGTTGT

Protein sequence

Show/hide protein sequence

MWAPEIYKWISFHVRTRFTLEMASTALILPIKGRNLPPSQYLSFRHTHPSATFSRVNPQLNYILTNRVGKPPLQAESLEKISPMATGDSTVRSLVFCFVWIHTLTKTFTF
FDTLAFQMMSTRIGWGWSRDQNAGKCTHRTRGQAFQISNCSTASPGKDGLIKQVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQTGKG
ILAQLADYFSIIINFFIR

Lsi11G007520 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome