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Lsi11G007760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G007760
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S acidic ribosomal protein P3
Genome locationchr11:8908489..8909906
RNA-Seq ExpressionLsi11G007760
SyntenyLsi11G007760
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR044252 - 60S acidic ribosomal protein P3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148320.1 60S acidic ribosomal protein P3-2 [Cucumis sativus]2.5e-4893.44Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP+SAVFQVIVGGG GGGF  GGG AAAAPAGG APAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDD+DLGLSLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

XP_008451467.1 PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo]3.2e-5196.72Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITPTSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDD+DLGLSLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

XP_022153281.1 60S acidic ribosomal protein P3-2 [Momordica charantia]1.9e-4387.7Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS I+PTSAVFQVI+GGGGGGGFI GGGAAAAAP+GG AP AAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEE KEES DDDLGLSLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

XP_022929782.1 60S acidic ribosomal protein P3-2-like [Cucurbita moschata]1.6e-4789.34Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TPTSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDDDDLG SLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

XP_038889531.1 60S acidic ribosomal protein P3-2 [Benincasa hispida]4.5e-5397.54Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITPTSAVFQVIVGGGGGGGFIGGGG AAAAPAGGDAPAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDD+DLGLSLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0LJB2 Uncharacterized protein1.2e-4893.44Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP+SAVFQVIVGGG GGGF  GGG AAAAPAGG APAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDD+DLGLSLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

A0A1S3BRK9 60S acidic ribosomal protein P3-21.6e-5196.72Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITPTSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDD+DLGLSLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

A0A5D3BNN6 60S acidic ribosomal protein P3-21.6e-5196.72Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITPTSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDD+DLGLSLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

A0A6J1ENN1 60S acidic ribosomal protein P3-2-like8.0e-4889.34Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TPTSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDDDDLG SLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

A0A6J1KB28 60S acidic ribosomal protein P3-2-like8.0e-4889.34Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TPTSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLFD
        AEKKEEVKEESDDDDLG SLFD
Subjt:  AEKKEEVKEESDDDDLGLSLFD

SwissProt top hitse value%identityAlignment
O24413 60S acidic ribosomal protein P32.1e-2960.98Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGG-GGGGGFIGGGGAAAAAPAGGDAPAAAEA
        MGV+TFVCR++GG+WTA Q+SG++E SA + YELQR+LV +A + DS  GVQSSFS++TP+SAVFQVIVG  GGG   + GGG   AA +GG   AAAEA
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGG-GGGGGFIGGGGAAAAAPAGGDAPAAAEA

Query:  PAEKKEEVKEESDDDDLGLSLFD
        P E+K+E ++E  DDD+G SLFD
Subjt:  PAEKKEEVKEESDDDDLGLSLFD

P56724 60S acidic ribosomal protein P31.2e-2965.32Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGV+TFVCRSSG +WTA Q  G+LE SA + YELQR+LV +A + DS+ GVQSSFS+++P+SAVFQVI+G  GGG  IGGG AA AA  G    AAAEAP
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  --AEKKEEVKEESDDDDLGLSLFD
           EKKEE KEES +DDLG SLFD
Subjt:  --AEKKEEVKEESDDDDLGLSLFD

Q9LVC9 60S acidic ribosomal protein P3-22.8e-3466.94Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++PTSAVF V++GGGGGGGF  GGGAAA    GG+A AA +  
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLF
         +KKEE +EE  + D G  LF
Subjt:  AEKKEEVKEESDDDDLGLSLF

Q9SVZ6 60S acidic ribosomal protein P3-18.5e-3165.29Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFSL++PTSAVFQVIVGGGGGGGF   GGAA++    G+A AA +  
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLF
         +KKEE +EE  + D G  LF
Subjt:  AEKKEEVKEESDDDDLGLSLF

Arabidopsis top hitse value%identityAlignment
AT4G25890.1 60S acidic ribosomal protein family6.1e-3265.29Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFSL++PTSAVFQVIVGGGGGGGF   GGAA++    G+A AA +  
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLF
         +KKEE +EE  + D G  LF
Subjt:  AEKKEEVKEESDDDDLGLSLF

AT5G57290.1 60S acidic ribosomal protein family2.0e-3566.94Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++PTSAVF V++GGGGGGGF  GGGAAA    GG+A AA +  
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLF
         +KKEE +EE  + D G  LF
Subjt:  AEKKEEVKEESDDDDLGLSLF

AT5G57290.2 60S acidic ribosomal protein family9.7e-3076.83Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGG
        MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++PTSAVF V++GGGGGGGF  GGG
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGG

AT5G57290.3 60S acidic ribosomal protein family3.8e-3466.94Show/hide
Query:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP
        MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++PTSAVF V++GGGGGGGF  GGGAAA    GG+A AA +  
Subjt:  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGLSLF
         +KKEE +EE  + D G  LF
Subjt:  AEKKEEVKEESDDDDLGLSLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTACTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAA
GCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCATCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTGATCGTTGGCGGTGGCGGTG
GAGGCGGTTTCATTGGAGGTGGTGGAGCTGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAG
AGTGATGATGATGACCTTGGCCTATCACTCTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATTTAACAAAGGCAAACCCTCGTTTTCCTCTCTCGCTAGGGTTTCATCTGTCAACATAAAAACCACATACAATCCGCAGAAGAGAGCCGTCCACTCCCAACTCTCTCCAT
TTTCTTCTTCGCAATTCTCTTCAAGCAAAATCCCGATTCGAAGATCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTA
CTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCATCTTTCTCTC
TCATTACTCCCACCTCCGCCGTTTTCCAGGTGATCGTTGGCGGTGGCGGTGGAGGCGGTTTCATTGGAGGTGGTGGAGCTGCTGCAGCTGCCCCTGCTGGAGGAGATGCT
CCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTCTTTGATTAGTTGGTATAATTACTCGTTAT
TGTTATTAACCTCAGAGGTTTTAGCACTCAGGTTTTCTTTTCAGGAAATTATGTCTATGCATTTACTTGAATTTGCAAGTTCAGTTGCTATTCTTGTTAAGGACGTAAAA
TTTTGTTAATGACCTTTGTCAAATGGTTGAGAATTAGATGTGTTATTTTGGAATTGTGTTTGGGAAGCTCGATTATCCGTCATAGATACTATTTGTTGTTGAAGAGATTC
TAAGCTAGGGGTGGG
Protein sequenceShow/hide protein sequence
MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEE
SDDDDLGLSLFD