; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G007960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G007960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEAF domain-containing protein
Genome locationchr11:9334705..9335775
RNA-Seq ExpressionLsi11G007960
SyntenyLsi11G007960
Gene Ontology termsGO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0032783 - ELL-EAF complex (cellular component)
GO:0003711 - transcription elongation regulator activity (molecular function)
InterPro domainsIPR019194 - Transcription elongation factor Eaf, N-terminal
IPR027093 - EAF family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579241.1 Ell-associated factor Eaf, partial [Cucurbita argyrosperma subsp. sororia]4.1e-11472.17Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------
        MANNNKEE KTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDK K GSLKKTKENRVTIEF+N+Q GKPNV FVGSSE      A         
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------

Query:  ------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSD
                            ++  A   A+ST+AS +HSLTP EPRLSPP AKV KPMHMGRGSF ++ VEVE+ DIGE GNTGAK  VASKG  DYSSD
Subjt:  ------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSD

Query:  PPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKA
        PPNVSA SPG K DDEHQDI IDDIFG V S+D NNAEE++V+ GFDIN+PH NDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAEGREGPT AAAL+A
Subjt:  PPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKA

Query:  QVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
        QVNAEGRD QSSSSS S SGSG SSGSSS +SDSEG+DEDSVTSI
Subjt:  QVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

XP_008454810.1 PREDICTED: ELL-associated factor 2 [Cucumis melo]3.1e-11471.23Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSE----------------
        MANN  EE KTAPQPDRWYNLSLGPSFKDESSNKFCT RYEFKPASIDK K G LKKTKENRVT+EF+N Q GKPN+ F+GSSE                
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSE----------------

Query:  ---------------------SSAAATATTITTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKS
                             ++AAATAT  TTTAG+AAPAAT ++ASVLHSLTP EPRLSPPV KVAKPMHMGR SF TMPVEVER DIGE GN GAK 
Subjt:  ---------------------SSAAATATTITTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKS

Query:  GVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAE
         VASKG+TDYSSDPPN S SSPGLK DDEHQDI IDDIFG V S+DGNNAEEERVETGFDINIPHQNDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAE
Subjt:  GVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAE

Query:  GREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
        GR                    QSSSSS SGSGSG SSGSSS +SDSEGSDEDSVTSI
Subjt:  GREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

XP_022939831.1 ELL-associated factor 1 [Cucurbita moschata]8.3e-11572.75Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------
        MANNNKEE KTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDK K GSLKKTKENRVTIEF+N+Q GKPNV FVGSSE      A         
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------

Query:  ------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSD
                            ++  A  AA+ST+AS LHSLTP EPRLSPP AKV KPMHMGRGSF ++ VEVE+ DIGE GNTGAK  VASKG  DYSSD
Subjt:  ------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSD

Query:  PPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKA
        PPNVSA SPG K DDEHQDI IDDIFG V S+D NNAEE++V+ GFDIN+PH NDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAEGREGPT AAAL+A
Subjt:  PPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKA

Query:  QVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
        QVNAEGRD QSSSSS S SGSG SSGSSS +SDSEG+DEDSVTSI
Subjt:  QVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

XP_022993461.1 ELL-associated factor 1 [Cucurbita maxima]9.8e-11673.2Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------
        MANNNKEE KTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDK K GSLKKTKENRVTIEF+N+Q GKPNV FVGSSE      A         
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------

Query:  --------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYS
                            ++ AG+A  AA+ST+AS LHSLTP EPRLSPP AKV KPMHMGRGSF ++ VEVE+ DIGE GNTGAKS VASKG  DYS
Subjt:  --------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYS

Query:  SDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAAL
        SDPPNVSA SPG K DDEHQDI IDDIFG V S+D NNAEE++V+ GFDIN+PH NDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAEGREGPT AAAL
Subjt:  SDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAAL

Query:  KAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
        +AQVNAEGRD QSSSSS S SGSG SSGSSS +SDSEG+DEDSVTSI
Subjt:  KAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

XP_038893321.1 ELL-associated factor 2-like [Benincasa hispida]8.2e-13178.21Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSE----------------
        MANNNKEE KTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDK K GSLKKTKENRVT+EF+N+QFGKPNV FVGSSE                
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSE----------------

Query:  -------------------SSAAATATTITTTAGMAAPAATSTT--ASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKS
                            SAAA A    TT G+AAPA TST+  AS LHSLTP EPRLSPPVAKVAKPMHMGRGSF TMPVEVER DIGE GNTGAKS
Subjt:  -------------------SSAAATATTITTTAGMAAPAATSTT--ASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKS

Query:  GVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAE
         VASKG+ DYSSDPPNVSASSPGLK DDEHQDI IDD+FG VLS+DGNNAEEERVETGFDINIPHQNDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAE
Subjt:  GVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAE

Query:  GREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
        GREGPT AAAL+AQV+AEGRD+QSSSSS SGSGSG SSGSSS +SDSEGSDEDSVTSI
Subjt:  GREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

TrEMBL top hitse value%identityAlignment
A0A0A0KM56 EAF domain-containing protein1.1e-10970.14Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSE----------------
        MANN  EE KTAPQPDRWYNLSLGPSFKDESSNKFCT RYEFKPASIDK K G LKKTKENRVT+EF+N Q GKPN+ FVGSSE                
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSE----------------

Query:  ------------------SSAAATATTITTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVA
                            +AA      TTAG+AAPAA  TTASVLHSLTP EPRLSPPV KV+KPMHMGR SF TMPVEVER DIGE GN GAK+ VA
Subjt:  ------------------SSAAATATTITTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVA

Query:  SKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGRE
        SKG+T+YSSDPPNVS SSPGLK DDEHQDI IDDIFG V S+DGNNAEEERVE GFDINIPHQNDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAEGR 
Subjt:  SKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGRE

Query:  GPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
                           QSSSSS SGSGSG SSGSSS +SDSE SDEDSVTSI
Subjt:  GPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

A0A1S3C0N3 ELL-associated factor 21.5e-11471.23Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSE----------------
        MANN  EE KTAPQPDRWYNLSLGPSFKDESSNKFCT RYEFKPASIDK K G LKKTKENRVT+EF+N Q GKPN+ F+GSSE                
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSE----------------

Query:  ---------------------SSAAATATTITTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKS
                             ++AAATAT  TTTAG+AAPAAT ++ASVLHSLTP EPRLSPPV KVAKPMHMGR SF TMPVEVER DIGE GN GAK 
Subjt:  ---------------------SSAAATATTITTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKS

Query:  GVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAE
         VASKG+TDYSSDPPN S SSPGLK DDEHQDI IDDIFG V S+DGNNAEEERVETGFDINIPHQNDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAE
Subjt:  GVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAE

Query:  GREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
        GR                    QSSSSS SGSGSG SSGSSS +SDSEGSDEDSVTSI
Subjt:  GREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

A0A5A7T0X1 ELL-associated factor 21.1e-10171.96Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTITTTAGM
        MANN  EE KTAPQPDRWYNLSLGPSFKDESSNKFCT RYEFKPASIDK K G LKKTKENRVT+EF+N Q GKPN+ F+GSSE      A         
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTITTTAGM

Query:  AAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDD
              +     LH      PRLSPPV KVAKPMHMGR SF TMPVEVER DIGE GN GAK  VASKG+TDYSSDPPN S SSPGLK DDEHQDI IDD
Subjt:  AAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDD

Query:  IFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-S
        IFG V S+DGNNAEEERVETGFDINIPHQNDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAEGR                    QSSSSS SGSGSG S
Subjt:  IFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSG-S

Query:  SGSSSDNSDSEGSDEDSVTSI
        SGSSS +SDSEGSDEDSVTSI
Subjt:  SGSSSDNSDSEGSDEDSVTSI

A0A6J1FGX9 ELL-associated factor 14.0e-11572.75Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------
        MANNNKEE KTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDK K GSLKKTKENRVTIEF+N+Q GKPNV FVGSSE      A         
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------

Query:  ------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSD
                            ++  A  AA+ST+AS LHSLTP EPRLSPP AKV KPMHMGRGSF ++ VEVE+ DIGE GNTGAK  VASKG  DYSSD
Subjt:  ------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSD

Query:  PPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKA
        PPNVSA SPG K DDEHQDI IDDIFG V S+D NNAEE++V+ GFDIN+PH NDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAEGREGPT AAAL+A
Subjt:  PPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKA

Query:  QVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
        QVNAEGRD QSSSSS S SGSG SSGSSS +SDSEG+DEDSVTSI
Subjt:  QVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

A0A6J1JWD6 ELL-associated factor 14.7e-11673.2Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------
        MANNNKEE KTAPQPDRWY+LSLGPSF +ESSNKFCTLRYEFKPASIDK K GSLKKTKENRVTIEF+N+Q GKPNV FVGSSE      A         
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTI------

Query:  --------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYS
                            ++ AG+A  AA+ST+AS LHSLTP EPRLSPP AKV KPMHMGRGSF ++ VEVE+ DIGE GNTGAKS VASKG  DYS
Subjt:  --------------------TTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYS

Query:  SDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAAL
        SDPPNVSA SPG K DDEHQDI IDDIFG V S+D NNAEE++V+ GFDIN+PH NDTDDE+A+VDDS DEAEKGPNAAEALRAQVNAEGREGPT AAAL
Subjt:  SDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETGFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAAL

Query:  KAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI
        +AQVNAEGRD QSSSSS S SGSG SSGSSS +SDSEG+DEDSVTSI
Subjt:  KAQVNAEGRDNQSSSSSISGSGSG-SSGSSSDNSDSEGSDEDSVTSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71080.1 RNA polymerase II transcription elongation factor1.2e-4242.49Show/hide
Query:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATAT--------
        M+N++++E  TAP+ D+WY+L LG S KD+SS+KFCTLRYEFKPASIDK + GS+ K K+NRV++EF+N+Q GKP V F GSSE    + A         
Subjt:  MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATAT--------

Query:  -------TITTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSDPPNVSASSP
                +T    +  P     +A+   S  P+E RLS PV + AK   + R     +PVEVER +IG+  N+   +               NV A+SP
Subjt:  -------TITTTAGMAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSDPPNVSASSP

Query:  -GLKYD--DEHQDIHIDDIFG-FVLSNDGNNAEEERVETGFDINIPHQ--NDTDDEVANV-DDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKAQV
           K D  DEHQ+I + +IFG F   ND  NAE+E  + G  +   ++  + T++E+A+V DDS  E EKG NAAEALRAQVNAE ++  T++++  +  
Subjt:  -GLKYD--DEHQDIHIDDIFG-FVLSNDGNNAEEERVETGFDINIPHQ--NDTDDEVANV-DDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKAQV

Query:  NAEGRDNQSSSSSISGSGSGSSGSSSDNSDSEGS----DEDSVTSI
        ++ G D+   S S+S SGSGS G SS  S S GS    DED V S+
Subjt:  NAEGRDNQSSSSSISGSGSGSSGSSSDNSDSEGS----DEDSVTSI

AT5G38050.1 RNA polymerase II transcription elongation factor1.0e-2534.73Show/hide
Query:  NNNKEELKTAPQPDRWYNLSLGPSFKDES---SNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTITTTAG
        +N+ EE K AP+P+RWYN++LGP+  + +   S KFCTLRYEFKPASID  K G L K+K+N+VT+EF+N+Q  KP V F G SE         I    G
Subjt:  NNNKEELKTAPQPDRWYNLSLGPSFKDES---SNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTITTTAG

Query:  -----------------MAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSDPPNVSA
                         +  P  +++ + V+        ++ PPV K  K  H+   +    PV+ E                                 
Subjt:  -----------------MAAPAATSTTASVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSDPPNVSA

Query:  SSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETG---FDINIPHQND-TDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKAQV
                   +D++I+D       N+      +  +TG    DIN+PH  +  DDE+A VD + DE+ KG NAAEALRAQVNAE RE      + K+  
Subjt:  SSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVETG---FDINIPHQND-TDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKAQV

Query:  NAEGRDNQSSSSSISGSGSGSSGSS-SDNSDSEG
        +  GR+++SS S +  SGSGSS +S S  S SEG
Subjt:  NAEGRDNQSSSSSISGSGSGSSGSS-SDNSDSEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAACAACAACAAAGAAGAGCTGAAGACCGCGCCCCAGCCCGATCGATGGTATAACCTATCTCTTGGTCCTTCATTCAAGGATGAATCCTCCAACAAATTTTGCAC
TCTTCGATATGAATTTAAACCGGCGTCAATTGATAAAAAGAAGTTGGGATCGCTAAAAAAGACCAAGGAAAATAGGGTTACCATTGAATTTAAGAACGATCAATTTGGGA
AACCCAATGTGGGGTTTGTTGGTAGTAGCGAATCTTCTGCTGCTGCCACTGCCACTACCATTACCACTACCGCTGGCATGGCTGCCCCCGCCGCCACATCCACCACTGCT
TCAGTCCTTCATTCTTTGACGCCGCTGGAGCCTCGGTTATCTCCTCCAGTGGCTAAAGTTGCCAAACCTATGCATATGGGTCGAGGCAGTTTTTCGACGATGCCAGTAGA
GGTGGAAAGAAAAGATATTGGAGAGCTAGGAAATACAGGTGCAAAATCTGGTGTTGCTAGTAAGGGGATTACGGATTACTCATCAGATCCACCAAATGTATCTGCTTCCT
CTCCTGGCCTGAAGTATGATGATGAGCATCAAGATATACATATTGATGATATTTTCGGGTTTGTTTTGTCTAATGATGGAAATAATGCTGAAGAAGAAAGAGTTGAGACT
GGGTTCGATATAAATATACCACATCAGAACGATACAGACGATGAGGTTGCTAATGTGGATGATAGTAGTGATGAAGCTGAGAAGGGACCTAATGCTGCAGAAGCCCTCAG
AGCTCAGGTTAATGCAGAGGGCAGGGAGGGACCTACTACTGCAGCAGCTCTCAAAGCACAGGTTAATGCAGAGGGTAGGGACAACCAGAGCTCGAGTTCTAGCATTAGCG
GTTCGGGCAGTGGCAGCAGCGGCAGCAGTAGTGACAACAGTGATAGTGAAGGTAGTGATGAGGATTCGGTTACCTCAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAACAACAACAAAGAAGAGCTGAAGACCGCGCCCCAGCCCGATCGATGGTATAACCTATCTCTTGGTCCTTCATTCAAGGATGAATCCTCCAACAAATTTTGCAC
TCTTCGATATGAATTTAAACCGGCGTCAATTGATAAAAAGAAGTTGGGATCGCTAAAAAAGACCAAGGAAAATAGGGTTACCATTGAATTTAAGAACGATCAATTTGGGA
AACCCAATGTGGGGTTTGTTGGTAGTAGCGAATCTTCTGCTGCTGCCACTGCCACTACCATTACCACTACCGCTGGCATGGCTGCCCCCGCCGCCACATCCACCACTGCT
TCAGTCCTTCATTCTTTGACGCCGCTGGAGCCTCGGTTATCTCCTCCAGTGGCTAAAGTTGCCAAACCTATGCATATGGGTCGAGGCAGTTTTTCGACGATGCCAGTAGA
GGTGGAAAGAAAAGATATTGGAGAGCTAGGAAATACAGGTGCAAAATCTGGTGTTGCTAGTAAGGGGATTACGGATTACTCATCAGATCCACCAAATGTATCTGCTTCCT
CTCCTGGCCTGAAGTATGATGATGAGCATCAAGATATACATATTGATGATATTTTCGGGTTTGTTTTGTCTAATGATGGAAATAATGCTGAAGAAGAAAGAGTTGAGACT
GGGTTCGATATAAATATACCACATCAGAACGATACAGACGATGAGGTTGCTAATGTGGATGATAGTAGTGATGAAGCTGAGAAGGGACCTAATGCTGCAGAAGCCCTCAG
AGCTCAGGTTAATGCAGAGGGCAGGGAGGGACCTACTACTGCAGCAGCTCTCAAAGCACAGGTTAATGCAGAGGGTAGGGACAACCAGAGCTCGAGTTCTAGCATTAGCG
GTTCGGGCAGTGGCAGCAGCGGCAGCAGTAGTGACAACAGTGATAGTGAAGGTAGTGATGAGGATTCGGTTACCTCAATATGA
Protein sequenceShow/hide protein sequence
MANNNKEELKTAPQPDRWYNLSLGPSFKDESSNKFCTLRYEFKPASIDKKKLGSLKKTKENRVTIEFKNDQFGKPNVGFVGSSESSAAATATTITTTAGMAAPAATSTTA
SVLHSLTPLEPRLSPPVAKVAKPMHMGRGSFSTMPVEVERKDIGELGNTGAKSGVASKGITDYSSDPPNVSASSPGLKYDDEHQDIHIDDIFGFVLSNDGNNAEEERVET
GFDINIPHQNDTDDEVANVDDSSDEAEKGPNAAEALRAQVNAEGREGPTTAAALKAQVNAEGRDNQSSSSSISGSGSGSSGSSSDNSDSEGSDEDSVTSI