CuGenDBv2

Gene ID	Lsi11G007980
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA ligase
Genome location	chr11:9351804..9353209
RNA-Seq Expression	Lsi11G007980
Synteny	Lsi11G007980
Gene Ontology terms	GO:0006297 - nucleotide-excision repair, DNA gap filling (biological process) GO:0006303 - double-strand break repair via nonhomologous end joining (biological process) GO:0034645 - cellular macromolecule biosynthetic process (biological process) GO:0051103 - DNA ligation involved in DNA repair (biological process) GO:0032807 - DNA ligase IV complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003910 - DNA ligase (ATP) activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR001357 - BRCT domain IPR036420 - BRCT domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK03079.1 DNA ligase 4 isoform X4 [Cucumis melo var. makuwa]

6.0e-88

65.8

Show/hide

Query:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV
        NEAE     KD+I+IVAHQWLEDCLERAQRLQED+Y+LNPN KKSI+NINSGMD   P  SE+ DN QI  PSKEYKD+GRNEAASGQ MLS+S ERSG 
Subjt:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV

Query:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA
        KKRGRP+ RSMQK KS VEQVRR +TR AKGPAKISEVE DSSD TD+KT  ETGN+GTLC ENSEK  FKTLENEIS+  K G             A+ 
Subjt:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA

Query:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL
        +RRTRARIAK SAKI   ESG++DS++ +TN EESK+EKEEN KT+EFK+L+DY+SK+KGKAIEE VRAD                    FK +EK EKL
Subjt:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL

Query:  EVMNDPL
        EVM DPL
Subjt:  EVMNDPL

XP_038889084.1 DNA ligase 4 isoform X1 [Benincasa hispida]

3.1e-113

76.3

Show/hide

Query:  CNEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSG
        C+EAE     KDKI+IV HQWLEDCLERAQRLQEDAYSLNPN KKSIDNINSGMD  +PSASENIDNQQI SPS+EYKDQGRNEAASGQH LSYSTERSG
Subjt:  CNEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSG

Query:  VKKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISD-------------QGKAGAK
         KKR RP+ARSMQKGKS V+QVR  RTRTAKGPAKISEVE D+SDYTD+KTN ET NVGTLC E SEK+EFKTLENEIS+             +GKAGAK
Subjt:  VKKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISD-------------QGKAGAK

Query:  AVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEK
        AVRRTRARI KGSAKI +IESGS+DS++ KTNT+E +KEKEENSK DEFK+L D++ K+KGKAIEENVRAD  SNV+FGK+PE+ ISERY+FKD+EK EK
Subjt:  AVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEK

Query:  LEVMNDPL
        LE+M DPL
Subjt:  LEVMNDPL

XP_038889085.1 DNA ligase 4 isoform X2 [Benincasa hispida]

3.1e-113

76.3

Show/hide

Query:  CNEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSG
        C+EAE     KDKI+IV HQWLEDCLERAQRLQEDAYSLNPN KKSIDNINSGMD  +PSASENIDNQQI SPS+EYKDQGRNEAASGQH LSYSTERSG
Subjt:  CNEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSG

Query:  VKKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISD-------------QGKAGAK
         KKR RP+ARSMQKGKS V+QVR  RTRTAKGPAKISEVE D+SDYTD+KTN ET NVGTLC E SEK+EFKTLENEIS+             +GKAGAK
Subjt:  VKKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISD-------------QGKAGAK

Query:  AVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEK
        AVRRTRARI KGSAKI +IESGS+DS++ KTNT+E +KEKEENSK DEFK+L D++ K+KGKAIEENVRAD  SNV+FGK+PE+ ISERY+FKD+EK EK
Subjt:  AVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEK

Query:  LEVMNDPL
        LE+M DPL
Subjt:  LEVMNDPL

XP_038889086.1 DNA ligase 4 isoform X3 [Benincasa hispida]

3.1e-113

76.3

Show/hide

Query:  CNEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSG
        C+EAE     KDKI+IV HQWLEDCLERAQRLQEDAYSLNPN KKSIDNINSGMD  +PSASENIDNQQI SPS+EYKDQGRNEAASGQH LSYSTERSG
Subjt:  CNEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSG

Query:  VKKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISD-------------QGKAGAK
         KKR RP+ARSMQKGKS V+QVR  RTRTAKGPAKISEVE D+SDYTD+KTN ET NVGTLC E SEK+EFKTLENEIS+             +GKAGAK
Subjt:  VKKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISD-------------QGKAGAK

Query:  AVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEK
        AVRRTRARI KGSAKI +IESGS+DS++ KTNT+E +KEKEENSK DEFK+L D++ K+KGKAIEENVRAD  SNV+FGK+PE+ ISERY+FKD+EK EK
Subjt:  AVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEK

Query:  LEVMNDPL
        LE+M DPL
Subjt:  LEVMNDPL

XP_038889088.1 DNA ligase 4 isoform X4 [Benincasa hispida]

3.1e-113

76.3

Show/hide

Query:  CNEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSG
        C+EAE     KDKI+IV HQWLEDCLERAQRLQEDAYSLNPN KKSIDNINSGMD  +PSASENIDNQQI SPS+EYKDQGRNEAASGQH LSYSTERSG
Subjt:  CNEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSG

Query:  VKKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISD-------------QGKAGAK
         KKR RP+ARSMQKGKS V+QVR  RTRTAKGPAKISEVE D+SDYTD+KTN ET NVGTLC E SEK+EFKTLENEIS+             +GKAGAK
Subjt:  VKKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISD-------------QGKAGAK

Query:  AVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEK
        AVRRTRARI KGSAKI +IESGS+DS++ KTNT+E +KEKEENSK DEFK+L D++ K+KGKAIEENVRAD  SNV+FGK+PE+ ISERY+FKD+EK EK
Subjt:  AVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEK

Query:  LEVMNDPL
        LE+M DPL
Subjt:  LEVMNDPL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BQX9 DNA ligase

3.2e-87

65.15

Show/hide

Query:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV
        NEAE     KD+I+IVAHQWLEDCLERAQRLQED+Y+LNPN KKSI+NINSGMD   P  SE+ DN QI  PS EYKD+GRNEAASGQ MLS+S ERSG 
Subjt:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV

Query:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA
        KKRG+P+ RSMQK KS VEQVRR +TR AKGPAKISEVE DSSD TD+KT  ETGN+GTLC ENSEK  FKTLENEIS+  K G             A+ 
Subjt:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA

Query:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL
        +RRTRARIAK SAKI   ESG++DS++ +TN EESK+EKEEN KT+EFK+L+DY+SK+KGKAIEE VRAD                    FK +EK EKL
Subjt:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL

Query:  EVMNDPL
        EVM DPL
Subjt:  EVMNDPL

A0A1S3BRM3 DNA ligase

3.2e-87

65.15

Show/hide

Query:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV
        NEAE     KD+I+IVAHQWLEDCLERAQRLQED+Y+LNPN KKSI+NINSGMD   P  SE+ DN QI  PS EYKD+GRNEAASGQ MLS+S ERSG 
Subjt:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV

Query:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA
        KKRG+P+ RSMQK KS VEQVRR +TR AKGPAKISEVE DSSD TD+KT  ETGN+GTLC ENSEK  FKTLENEIS+  K G             A+ 
Subjt:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA

Query:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL
        +RRTRARIAK SAKI   ESG++DS++ +TN EESK+EKEEN KT+EFK+L+DY+SK+KGKAIEE VRAD                    FK +EK EKL
Subjt:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL

Query:  EVMNDPL
        EVM DPL
Subjt:  EVMNDPL

A0A1S3BRY5 DNA ligase

3.2e-87

65.15

Show/hide

Query:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV
        NEAE     KD+I+IVAHQWLEDCLERAQRLQED+Y+LNPN KKSI+NINSGMD   P  SE+ DN QI  PS EYKD+GRNEAASGQ MLS+S ERSG 
Subjt:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV

Query:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA
        KKRG+P+ RSMQK KS VEQVRR +TR AKGPAKISEVE DSSD TD+KT  ETGN+GTLC ENSEK  FKTLENEIS+  K G             A+ 
Subjt:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA

Query:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL
        +RRTRARIAK SAKI   ESG++DS++ +TN EESK+EKEEN KT+EFK+L+DY+SK+KGKAIEE VRAD                    FK +EK EKL
Subjt:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL

Query:  EVMNDPL
        EVM DPL
Subjt:  EVMNDPL

A0A1S4E0Q0 DNA ligase

3.2e-87

65.15

Show/hide

Query:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV
        NEAE     KD+I+IVAHQWLEDCLERAQRLQED+Y+LNPN KKSI+NINSGMD   P  SE+ DN QI  PS EYKD+GRNEAASGQ MLS+S ERSG 
Subjt:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV

Query:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA
        KKRG+P+ RSMQK KS VEQVRR +TR AKGPAKISEVE DSSD TD+KT  ETGN+GTLC ENSEK  FKTLENEIS+  K G             A+ 
Subjt:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA

Query:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL
        +RRTRARIAK SAKI   ESG++DS++ +TN EESK+EKEEN KT+EFK+L+DY+SK+KGKAIEE VRAD                    FK +EK EKL
Subjt:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL

Query:  EVMNDPL
        EVM DPL
Subjt:  EVMNDPL

A0A5D3BYC7 DNA ligase 4 isoform X4

2.9e-88

65.8

Show/hide

Query:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV
        NEAE     KD+I+IVAHQWLEDCLERAQRLQED+Y+LNPN KKSI+NINSGMD   P  SE+ DN QI  PSKEYKD+GRNEAASGQ MLS+S ERSG 
Subjt:  NEAE-----KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGV

Query:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA
        KKRGRP+ RSMQK KS VEQVRR +TR AKGPAKISEVE DSSD TD+KT  ETGN+GTLC ENSEK  FKTLENEIS+  K G             A+ 
Subjt:  KKRGRPSARSMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAG-------------AKA

Query:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL
        +RRTRARIAK SAKI   ESG++DS++ +TN EESK+EKEEN KT+EFK+L+DY+SK+KGKAIEE VRAD                    FK +EK EKL
Subjt:  VRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKL

Query:  EVMNDPL
        EVM DPL
Subjt:  EVMNDPL

SwissProt top hits

e value

%identity

Alignment

Q7X7E9 Putative DNA ligase 4

1.6e-06

28.16

Show/hide

Query:  KIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGVKKRGRPSARSM
        ++ +V+++WLED +E+  RL E  YSL P+  + I+         I  + E +       P  +  ++  NE A   H+      +   +KRGRPS+ + 
Subjt:  KIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGVKKRGRPSARSM

Query:  QKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAGAKAVRRTRARIAKGSAKIANIESGSSD
        +  K +   VRR R R     AKI +VE + SD+       ETG    L  +  +      +E +  D+ +  A+ VRRTRAR  K  AKI   +S  SD
Subjt:  QKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAGAKAVRRTRARIAKGSAKIANIESGSSD

Query:  SSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRA
          E  T  ++ + + +  SK +E    +D  +      +    RA
Subjt:  SSEAKTNTEESKKEKEENSKTDEFKILQDYNSKEKGKAIEENVRA

Q9LL84 DNA ligase 4

7.0e-07

24.15

Show/hide

Query:  KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGVKKRGRPSAR
        K ++++V+  WLE+ L+R ++L ED Y+L P   +  D   S         SE+   +  S  S + K+   ++ A                 RGR + R
Subjt:  KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGVKKRGRPSAR

Query:  SMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAGAKAVRRT-RARIAKGSAKIANIESG
        ++++G+SS   ++RV+ R  K P+KIS  E + SD +++K +    ++     ++  +++  +   + + +GK+     +R  R+R  K +AKI   ES 
Subjt:  SMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAGAKAVRRT-RARIAKGSAKIANIESG

Query:  SSDSSEAKTNTEESKKE------KEENSKTDEFKILQDYNSKEKGK--AIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKLEVMNDPL
         +D  +   N     +E        EN +T E  I +   S+++    A+EE ++    +  E                 M+  EKL++  DPL
Subjt:  SSDSSEAKTNTEESKKE------KEENSKTDEFKILQDYNSKEKGK--AIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKLEVMNDPL

Arabidopsis top hits

e value

%identity

Alignment

AT5G57160.1 DNA ligase IV

5.0e-08

24.15

Show/hide

Query:  KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGVKKRGRPSAR
        K ++++V+  WLE+ L+R ++L ED Y+L P   +  D   S         SE+   +  S  S + K+   ++ A                 RGR + R
Subjt:  KDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGVKKRGRPSAR

Query:  SMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAGAKAVRRT-RARIAKGSAKIANIESG
        ++++G+SS   ++RV+ R  K P+KIS  E + SD +++K +    ++     ++  +++  +   + + +GK+     +R  R+R  K +AKI   ES 
Subjt:  SMQKGKSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAGAKAVRRT-RARIAKGSAKIANIESG

Query:  SSDSSEAKTNTEESKKE------KEENSKTDEFKILQDYNSKEKGK--AIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKLEVMNDPL
         +D  +   N     +E        EN +T E  I +   S+++    A+EE ++    +  E                 M+  EKL++  DPL
Subjt:  SSDSSEAKTNTEESKKE------KEENSKTDEFKILQDYNSKEKGK--AIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKLEVMNDPL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TGCAATGAAGCAGAGAAAGATAAGATTTATATTGTTGCACACCAGTGGTTGGAAGACTGTTTGGAGAGGGCCCAAAGGTTGCAAGAAGATGCATATAGCTTGAATCCCAA
TAGAAAAAAGTCGATTGACAATATAAATTCTGGCATGGATCCTAGGATCCCCTCGGCCTCGGAAAATATAGACAATCAGCAAATTTCCTCTCCTTCCAAGGAGTATAAAG
ATCAAGGAAGAAATGAAGCTGCTTCAGGACAACACATGCTCTCCTATTCAACCGAGAGATCTGGTGTAAAGAAAAGAGGAAGACCTTCTGCAAGGAGCATGCAGAAAGGG
AAATCAAGTGTCGAACAGGTTCGAAGAGTTCGGACCCGAACAGCCAAGGGGCCAGCAAAAATAAGTGAAGTTGAGTTAGATAGCAGTGACTATACTGATGATAAAACAAA
TGTTGAAACTGGAAATGTTGGAACATTATGCAGAGAAAACTCAGAAAAGAGCGAGTTTAAAACGCTAGAAAATGAGATATCTGACCAAGGGAAAGCAGGGGCCAAAGCAG
TTCGAAGAACTCGGGCACGTATTGCCAAAGGATCTGCAAAAATAGCTAATATTGAGTCAGGCAGCAGTGACTCTAGTGAAGCAAAAACGAACACAGAAGAATCTAAAAAG
GAGAAAGAGGAAAACTCTAAAACGGATGAGTTTAAAATTCTACAAGACTACAATTCAAAAGAAAAAGGCAAAGCCATTGAAGAAAATGTTCGTGCAGACTCCGAATCTAA
TGTTGAGTTTGGGAAACTTCCGGAAATTGATATATCTGAAAGATACAATTTCAAAGACATGGAAAAATCTGAGAAGCTTGAAGTCATGAATGACCCACTT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

CNEAEKDKIYIVAHQWLEDCLERAQRLQEDAYSLNPNRKKSIDNINSGMDPRIPSASENIDNQQISSPSKEYKDQGRNEAASGQHMLSYSTERSGVKKRGRPSARSMQKG
KSSVEQVRRVRTRTAKGPAKISEVELDSSDYTDDKTNVETGNVGTLCRENSEKSEFKTLENEISDQGKAGAKAVRRTRARIAKGSAKIANIESGSSDSSEAKTNTEESKK
EKEENSKTDEFKILQDYNSKEKGKAIEENVRADSESNVEFGKLPEIDISERYNFKDMEKSEKLEVMNDPL

Lsi11G007980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome