CuGenDBv2

Gene ID	Lsi11G008560
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	chr11:10801023..10803124
RNA-Seq Expression	Lsi11G008560
Synteny	Lsi11G008560
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR006243 - Photosystem I PsaA IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ARD00676.1 photosystem I P700 apoprotein A1 [Prunus andersonii]

1.8e-51

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   ++ +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

QGW14943.1 photosystem I P700 apoprotein A1 [Hippophae tibetana]

1.8e-51

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

XP_020979413.1 uncharacterized protein LOC110272002 [Arachis ipaensis]

2.8e-60

43.13

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG  VHA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQKV------------ESYGLV-------------VRWGSSS------------IPMSVSADLNSHTFSLVRHLRIGYWTRNASI-RSY
        MSALG  QDMFS                ++ L              + WG               IP+  +  L  H  +   H+ +    +     RS 
Subjt:  MSALGHHQDMFSQKV------------ESYGLV-------------VRWGSSS------------IPMSVSADLNSHTFSLVRHLRIGYWTRNASI-RSY

Query:  NVRTNDCILNYQF-------NSSIKASNFCYEPSYLCLYIDKDASPLEI--LEWTIDKKKGKVRSSRNFSCRLAYSTFYSNTL-----------YHESNS
         +  +   L ++F         + + S   ++  +L L+   +A  + I    W +        S +     +    F  +++              S  
Subjt:  NVRTNDCILNYQF-------NSSIKASNFCYEPSYLCLYIDKDASPLEI--LEWTIDKKKGKVRSSRNFSCRLAYSTFYSNTL-----------YHESNS

Query:  FDKYNNNLLGQ-LYPSFGEGATPFFTLNWSKYAEFLTFLRGLDPVT------------RAIAILFLITGRM
           Y ++L    L+  F EGATPFFTLNWSKYA+FLTF  GLDPVT             AIAILFLI G +
Subjt:  FDKYNNNLLGQ-LYPSFGEGATPFFTLNWSKYAEFLTFLRGLDPVT------------RAIAILFLITGRM

YP_009412521.1 photosystem I P700 apoprotein A1 [Hippophae rhamnoides]

1.8e-51

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

YP_009687287.1 photosystem I P700 apoprotein A1 [Hippophae rhamnoides subsp. yunnanensis]

1.4e-51

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

TrEMBL top hits

e value

%identity

Alignment

A0A220T1A1 Photosystem I P700 chlorophyll a apoprotein A1

8.9e-52

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

A0A5B8GYG4 Photosystem I P700 chlorophyll a apoprotein A1

6.8e-52

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

A0A650GLZ8 Photosystem I P700 chlorophyll a apoprotein A1

8.9e-52

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

A0A6H1YIF3 Photosystem I P700 chlorophyll a apoprotein A1

8.9e-52

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

A0A7D4ZZ15 Photosystem I P700 chlorophyll a apoprotein A1

8.9e-52

72.92

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        MSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  MSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

SwissProt top hits

e value

%identity

Alignment

P06511 Photosystem I P700 chlorophyll a apoprotein A1

7.0e-54

70.13

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Query:  QLLLN----RSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFH
        QL LN     SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NW  IFLGFH
Subjt:  QLLLN----RSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFH

Query:  SFGLYIHNDTMSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS
        SFGLYIHNDTMSALG  QDMFS   ++   +  +W  ++  ++ SA     T S
Subjt:  SFGLYIHNDTMSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSADLNSHTFS

P58310 Photosystem I P700 chlorophyll a apoprotein A1

9.2e-54

90.18

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL IIVAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFS
        MSALG  QDMFS
Subjt:  MSALGHHQDMFS

Q14FF7 Photosystem I P700 chlorophyll a apoprotein A1

9.2e-54

82.26

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Query:  HNLYKRQLLLNRSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLG
        H      L +  SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLG
Subjt:  HNLYKRQLLLNRSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLG

Query:  FHSFGLYIHNDTMSALGHHQDMFS
        FHSFGLYIHNDTMSALG  QDMFS
Subjt:  FHSFGLYIHNDTMSALGHHQDMFS

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A1

5.4e-54

90.18

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Query:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT
        SL IIVAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFHSFGLYIHNDT
Subjt:  SLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDT

Query:  MSALGHHQDMFS
        MSALG  QDMFS
Subjt:  MSALGHHQDMFS

Q6EW48 Photosystem I P700 chlorophyll a apoprotein A1

4.1e-54

73.29

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Query:  QLLLN----RSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFH
        QL LN     SL I+VAHHMY MPPYPYLATDYGTQLSLFTHHMWIG FLIVG   HA IFMVRDYDPTTRYNDLLDRVLRHRDAIISH+NWV IFLGFH
Subjt:  QLLLN----RSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFH

Query:  SFGLYIHNDTMSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSA
        SFGLYIHNDTMSALG  QDMFS   ++   +  +W  ++  ++ SA
Subjt:  SFGLYIHNDTMSALGHHQDMFSQ-KVESYGLVVRWGSSSIPMSVSA

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

2.0e-27

42.03

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Query:  IVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDTMSAL
        +VA HMY +P Y ++A D+ TQ +L+THH +I  F++ G   H  IF +RDY+P    +++L R+L H++AIISH++W  +FLGFH+ GLY+HND M A 
Subjt:  IVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGLYIHNDTMSAL

Query:  GHH------QDMFSQKVE------SYGLVVRWGSSSIP
        G        + +F+Q ++      SYG  V   S+S P
Subjt:  GHH------QDMFSQKVE------SYGLVVRWGSSSIP

ATCG00350.1 Photosystem I, PsaA/PsaB protein

1.6e-53

81.45

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Query:  HNLYKRQLLLNRSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLG
        H      L +  SL IIVAHHMY MPPYPYLATDY TQLSLFTHHMWIG FLIVG   HA IFMVRDYDPT RYNDLLDRVLRHRDAIISH+NWV IFLG
Subjt:  HNLYKRQLLLNRSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLG

Query:  FHSFGLYIHNDTMSALGHHQDMFS
        FHSFGLYIHNDTMSALG  QDMFS
Subjt:  FHSFGLYIHNDTMSALGHHQDMFS

Sequences

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CDS sequence

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ATGAAATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGCTCTTTAATCATTATTGTAGCTCACCATATGTATGTGATGCCCCCTTATCCATATCTAGCTAC
TGACTATGGTACACAACTTTCATTGTTCACACATCACATGTGGATTGGTGAATTTCTCATAGTTGGTGTTGTTGTGCATGCAACCATTTTTATGGTAAGAGACTATGATC
CAACTACTCGTTACAACGATCTATTAGATCGTGTACTTAGGCATCGTGATGCAATCATATCACATATGAACTGGGTGTATATATTTTTAGGCTTTCACAGTTTTGGTTTG
TATATTCATAATGATACCATGAGTGCTTTAGGGCATCACCAAGATATGTTTTCTCAAAAGGTAGAAAGCTATGGTTTAGTAGTGAGGTGGGGAAGTTCTTCCATTCCCAT
GAGCGTGTCTGCGGATCTAAACTCGCATACTTTTTCACTGGTTCGTCATCTAAGAATTGGCTATTGGACTCGAAATGCTTCGATTCGGTCCTACAATGTTAGAACCAATG
ACTGTATACTTAACTACCAATTCAATTCTAGTATAAAAGCTTCAAACTTCTGTTATGAACCAAGCTACCTCTGTCTCTACATTGATAAGGACGCGTCCCCACTAGAGATT
CTAGAATGGACGATTGATAAAAAAAAAGGAAAAGTTCGTAGCAGCAGAAATTTTTCTTGTCGCTTGGCTTATTCTACTTTTTATAGTAATACTTTATATCATGAATCTAA
TAGCTTTGATAAGTACAATAACAATCTTTTGGGGCAACTTTATCCTAGTTTTGGTGAGGGAGCAACCCCATTTTTCACTTTGAATTGGTCAAAATATGCAGAATTTCTTA
CTTTTCTCAGAGGATTAGATCCAGTAACCAGAGCTATTGCAATTCTTTTCCTTATAACGGGCCGCATGCATAAGACTAAATGGGGCATTACACAATTTAAACTTTCTATA
TTTAAAGTTATGATATATACTATTGACTATAATGTCAAATCATGTTTGAATCTCTAA

mRNA sequence

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Protein sequence

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MKFIHNLYKRQLLLNRSLIIIVAHHMYVMPPYPYLATDYGTQLSLFTHHMWIGEFLIVGVVVHATIFMVRDYDPTTRYNDLLDRVLRHRDAIISHMNWVYIFLGFHSFGL
YIHNDTMSALGHHQDMFSQKVESYGLVVRWGSSSIPMSVSADLNSHTFSLVRHLRIGYWTRNASIRSYNVRTNDCILNYQFNSSIKASNFCYEPSYLCLYIDKDASPLEI
LEWTIDKKKGKVRSSRNFSCRLAYSTFYSNTLYHESNSFDKYNNNLLGQLYPSFGEGATPFFTLNWSKYAEFLTFLRGLDPVTRAIAILFLITGRMHKTKWGITQFKLSI
FKVMIYTIDYNVKSCLNL

Lsi11G008560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome