; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G008680 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G008680
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibonuclease H
Genome locationchr11:11187942..11189770
RNA-Seq ExpressionLsi11G008680
SyntenyLsi11G008680
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]2.4e-0438.3Show/hide
Query:  TSKEELFRILFNNRLIEQGNLQNDILISQYDDSLLFSYHAGAKGHSSDQCPHFSQKVRELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGECS
        T  EELF IL  +  +    L  ++    YD+SL   +HAGAKGH+ +QC  F   V+ELL+S  LTV+      S ++  I+  E+ S  E S
Subjt:  TSKEELFRILFNNRLIEQGNLQNDILISQYDDSLLFSYHAGAKGHSSDQCPHFSQKVRELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGECS

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]1.0e-1843.28Show/hide
Query:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---
        +++ANATT++G+ G  KPR  +   K N  SLD LL + KN +RFGLGYKP+R ++IR +  E   R+  FE+ E   S+ ++P L  S + AGTIH   
Subjt:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---

Query:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTV
         ES    AV E +++  P VY CP  F+ +NW+V
Subjt:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTV

XP_022147181.1 uncharacterized protein LOC111016192 [Momordica charantia]6.7e-2345.52Show/hide
Query:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---
        +++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR    E   R+  FE+ E    + ++P L  SF+ AG IH   
Subjt:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---

Query:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS
         ES  V  V E +++  P VY CP  FE +NW+V ELPS VN+ S
Subjt:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.2e-2444.31Show/hide
Query:  EVKEPTSEDDIQEFLRLVKQSDYKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PR
        EV E   E   Q F         ++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR +  E   R+  FE+ E   
Subjt:  EVKEPTSEDDIQEFLRLVKQSDYKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PR

Query:  SQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS
         +  +P L  SF+ AGTIH    ES  V AV E +++  P VYLCP  FE +NW+V +LPS VN+ S
Subjt:  SQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]1.1e-2245.21Show/hide
Query:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---
        +++ NATT++G+ G  K R  +   KG+  SLD LL + KN K+FGLGYK SR ++IR +  E   R+  FE+ E    +  +P L  SF+ AGTIH   
Subjt:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---

Query:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLSK
         ES  V AV E +++  P VYLCP  FE +NW+V ELPS VN+  K
Subjt:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLSK

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]1.0e-0242.86Show/hide
Query:  EEFSTGECSKCNSKEKGKAKLSDVIDCRIEEPLLVRNQEVKEPTSEDDIQEFLRLVKQSDYKV
        E+ S  +  K    +KGKAKL + +   + E ++V++   K+P SE++ QEFL+LVKQS+YKV
Subjt:  EEFSTGECSKCNSKEKGKAKLSDVIDCRIEEPLLVRNQEVKEPTSEDDIQEFLRLVKQSDYKV

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]6.3e-2145.52Show/hide
Query:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIHPE-
        +++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR +  E   R+  FE+ E    + ++P L  SF+ AGTIH E 
Subjt:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIHPE-

Query:  --SFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTV
          S  V AV E +++  P VY CP  FE +NW+V
Subjt:  --SFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTV

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H1.2e-0438.3Show/hide
Query:  TSKEELFRILFNNRLIEQGNLQNDILISQYDDSLLFSYHAGAKGHSSDQCPHFSQKVRELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGECS
        T  EELF IL  +  +    L  ++    YD+SL   +HAGAKGH+ +QC  F   V+ELL+S  LTV+      S ++  I+  E+ S  E S
Subjt:  TSKEELFRILFNNRLIEQGNLQNDILISQYDDSLLFSYHAGAKGHSSDQCPHFSQKVRELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGECS

A0A6J1CNY7 Ribonuclease H4.8e-1943.28Show/hide
Query:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---
        +++ANATT++G+ G  KPR  +   K N  SLD LL + KN +RFGLGYKP+R ++IR +  E   R+  FE+ E   S+ ++P L  S + AGTIH   
Subjt:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---

Query:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTV
         ES    AV E +++  P VY CP  F+ +NW+V
Subjt:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTV

A0A6J1D099 Ribonuclease H5.9e-2544.31Show/hide
Query:  EVKEPTSEDDIQEFLRLVKQSDYKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PR
        EV E   E   Q F         ++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR +  E   R+  FE+ E   
Subjt:  EVKEPTSEDDIQEFLRLVKQSDYKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PR

Query:  SQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS
         +  +P L  SF+ AGTIH    ES  V AV E +++  P VYLCP  FE +NW+V +LPS VN+ S
Subjt:  SQMSIPHLYESFKFAGTIH---PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS

A0A6J1D1K4 uncharacterized protein LOC1110161923.2e-2345.52Show/hide
Query:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---
        +++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR    E   R+  FE+ E    + ++P L  SF+ AG IH   
Subjt:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---

Query:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS
         ES  V  V E +++  P VY CP  FE +NW+V ELPS VN+ S
Subjt:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLS

A0A6J1DR66 uncharacterized protein LOC1110227915.5e-2345.21Show/hide
Query:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---
        +++ NATT++G+ G  K R  +   KG+  SLD LL + KN K+FGLGYK SR ++IR +  E   R+  FE+ E    +  +P L  SF+ AGTIH   
Subjt:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIH---

Query:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLSK
         ES  V AV E +++  P VYLCP  FE +NW+V ELPS VN+  K
Subjt:  PESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLSK

A0A6J1DR66 uncharacterized protein LOC1110227914.9e-0342.86Show/hide
Query:  EEFSTGECSKCNSKEKGKAKLSDVIDCRIEEPLLVRNQEVKEPTSEDDIQEFLRLVKQSDYKV
        E+ S  +  K    +KGKAKL + +   + E ++V++   K+P SE++ QEFL+LVKQS+YKV
Subjt:  EEFSTGECSKCNSKEKGKAKLSDVIDCRIEEPLLVRNQEVKEPTSEDDIQEFLRLVKQSDYKV

A0A6J1DR66 uncharacterized protein LOC1110227913.0e-2145.52Show/hide
Query:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIHPE-
        +++ANATT++G+ G  KPR  +   KG+  SLD LL + KN K+FGLGYKPSR ++IR +  E   R+  FE+ E    + ++P L  SF+ AGTIH E 
Subjt:  YKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEHHE-PRSQMSIPHLYESFKFAGTIHPE-

Query:  --SFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTV
          S  V AV E +++  P VY CP  FE +NW+V
Subjt:  --SFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAGGGAATTTGCAAAATGATATCCTCATTAGCCAATACGATGACAGTTTATT
ATTTTCATATCATGCTGGGGCAAAAGGTCACTCTAGTGACCAGTGCCCTCATTTCTCCCAGAAGGTACGAGAATTATTAAATTCTCATTTCCTAACGGTCTCACAGAAGG
TAGTTGGAGAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGTGCAATAGCAAGGAAAAAGGAAAAGCCAAGCTTAGTGAT
GTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAAAGGAGCCAACATCTGAAGATGATATCCAAGAGTTTTTAAGACTTGTAAAACAAAGTGA
TTATAAAGTTGCAAATGCCACCACTATATACGGAGAAAGAGGAACAAGGAAGCCACGATTTTCAAAGCTACCTTCAAAGGGAAATGGCAGAAGTTTGGATGACTTATTGA
ATGTGCAAAAAAATATGAAAAGATTTGGTTTGGGATATAAACCAAGCAGGGAAGAAATGATCAGAACACAAAAGCGGGAAAATAAGAATCGAATGATGAATTTTGAGCAT
CATGAGCCTCGAAGCCAAATGAGTATTCCTCATCTTTACGAATCTTTCAAATTCGCTGGCACAATCCATCCAGAAAGTTTTGAAGTAATGGCTGTCATAGAAGGCAAAGA
TGAAGAGTATCCCCTAGTCTACTTATGCCCAAAGGATTTTGAGCATAATAATTGGACCGTATTTGAGCTACCGTCAATTGTTAACGATTTATCAAAG
mRNA sequenceShow/hide mRNA sequence
ATGTGAGTGAGGTTGGTTTAAGGGATGTCGTGAGAATGATAACATCCAAAGAAGAGCTTTTTCGAATTTTGTTTAACAACAGATTGATCGAACAAGGGAATTTGCAAAAT
GATATCCTCATTAGCCAATACGATGACAGTTTATTATTTTCATATCATGCTGGGGCAAAAGGTCACTCTAGTGACCAGTGCCCTCATTTCTCCCAGAAGGTACGAGAATT
ATTAAATTCTCATTTCCTAACGGTCTCACAGAAGGTAGTTGGAGAATCAGAGCGTGAGCATGAAATAGATGCTGCAGAAGAGTTCTCAACAGGTGAATGCTCGAAGTGCA
ATAGCAAGGAAAAAGGAAAAGCCAAGCTTAGTGATGTCATTGATTGCAGGATAGAAGAGCCACTGTTGGTGAGAAATCAAGAAGTAAAGGAGCCAACATCTGAAGATGAT
ATCCAAGAGTTTTTAAGACTTGTAAAACAAAGTGATTATAAAGTTGCAAATGCCACCACTATATACGGAGAAAGAGGAACAAGGAAGCCACGATTTTCAAAGCTACCTTC
AAAGGGAAATGGCAGAAGTTTGGATGACTTATTGAATGTGCAAAAAAATATGAAAAGATTTGGTTTGGGATATAAACCAAGCAGGGAAGAAATGATCAGAACACAAAAGC
GGGAAAATAAGAATCGAATGATGAATTTTGAGCATCATGAGCCTCGAAGCCAAATGAGTATTCCTCATCTTTACGAATCTTTCAAATTCGCTGGCACAATCCATCCAGAA
AGTTTTGAAGTAATGGCTGTCATAGAAGGCAAAGATGAAGAGTATCCCCTAGTCTACTTATGCCCAAAGGATTTTGAGCATAATAATTGGACCGTATTTGAGCTACCGTC
AATTGTTAACGATTTATCAAAG
Protein sequenceShow/hide protein sequence
MITSKEELFRILFNNRLIEQGNLQNDILISQYDDSLLFSYHAGAKGHSSDQCPHFSQKVRELLNSHFLTVSQKVVGESEREHEIDAAEEFSTGECSKCNSKEKGKAKLSD
VIDCRIEEPLLVRNQEVKEPTSEDDIQEFLRLVKQSDYKVANATTIYGERGTRKPRFSKLPSKGNGRSLDDLLNVQKNMKRFGLGYKPSREEMIRTQKRENKNRMMNFEH
HEPRSQMSIPHLYESFKFAGTIHPESFEVMAVIEGKDEEYPLVYLCPKDFEHNNWTVFELPSIVNDLSK