; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G008800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G008800
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRna-binding protein
Genome locationchr11:11510248..11519985
RNA-Seq ExpressionLsi11G008800
SyntenyLsi11G008800
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0003729 - mRNA binding (molecular function)
GO:0017069 - snRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034215 - RBM42, RNA recognition motif
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152823.1 RNA-binding protein 42 [Cucumis sativus]1.4e-12193.98Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGPSSAPS+ASSSS+SQFTYSNGSYFPLPFHLQQSAPAPA PQY SPYVAPPGPPPVPLPVA VYPAPAP PAVYTLPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHK   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

XP_016899517.1 PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo]1.7e-12294.38Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGPSSAPS+ASSSS+SQFTYSNGSYFPLPFHLQQSAPAPA PQYPSPYVAPPGPPPVPLPVA VYPAPAP PAVYTLPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHK   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

XP_022937609.1 RNA-binding protein 42-like [Cucurbita moschata]2.4e-11690.76Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGP SAPSAASSSS +QFTYSNGSYFPLPFHLQQSAPA  APQYP+PYVA P PP VPLPVASVYP PAPAPA Y LPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+K   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

XP_023545858.1 RNA-binding protein 42-like [Cucurbita pepo subsp. pepo]3.1e-11691.57Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGPSSAPSA SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQYPSPYVA PGPP VPLPV SVY  PAPAPA YTLPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
         ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHK   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

XP_038890923.1 RNA-binding protein 42-like [Benincasa hispida]1.9e-12194.38Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGPSSAPSA SSSS SQFTYSNGSYFPLPFHLQQSAPA AAPQYPSPYVAPPGPP VPLPVASVYP PAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHK   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

TrEMBL top hitse value%identityAlignment
A0A0A0LH39 RRM domain-containing protein6.9e-12293.98Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGPSSAPS+ASSSS+SQFTYSNGSYFPLPFHLQQSAPAPA PQY SPYVAPPGPPPVPLPVA VYPAPAP PAVYTLPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHK   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

A0A1S4DU47 LOW QUALITY PROTEIN: RNA-binding protein 428.2e-12394.38Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGPSSAPS+ASSSS+SQFTYSNGSYFPLPFHLQQSAPAPA PQYPSPYVAPPGPPPVPLPVA VYPAPAP PAVYTLPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHK   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

A0A6J1ET57 RNA-binding protein 42-like4.3e-11691.16Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGPSS PSA SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQYPSPYVA PGPP VPLPV SVY  PAPAPA YTLPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
         ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHK   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

A0A6J1FBP0 RNA-binding protein 42-like1.1e-11690.76Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL
        MAGP SAPSAASSSS +QFTYSNGSYFPLPFHLQQSAPA  APQYP+PYVA P PP VPLPVASVYP PAPAPA Y LPQYQQAQQLFQRDAQTITPEAL
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEAL

Query:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
        ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA
Subjt:  ESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA

Query:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+K   Q  +K  K S
Subjt:  GALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

A0A6J1HLU5 RNA-binding protein 42-like9.7e-11690.44Show/hide
Query:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAP--APAVYTLPQYQQAQQLFQRDAQTITPE
        MAGP SAPSAASSSS +QFTYSNGSYFPLPFHLQQSAPA  APQYP+PYVA P PP VPLPVASVYP PAP  APA YTLPQYQQAQQLFQRDAQTITPE
Subjt:  MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAP--APAVYTLPQYQQAQQLFQRDAQTITPE

Query:  ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTD
        ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTD
Subjt:  ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTD

Query:  LAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        LAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR+K   Q  +K  K S
Subjt:  LAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

SwissProt top hitse value%identityAlignment
A2VDB3 RNA-binding protein 429.8e-4146.4Show/hide
Query:  PFHLQQSAPAPAAPQYPSPYVAPPGP-PPVPLPVASVYPAPAP-----APAVYTLPQYQQAQQLFQRD------------AQTITPEALESVKAALASSE
        P  L +  P P     P P  AP GP PP P P+    P   P     AP VYT P  ++ ++                  +T+   ++  ++       
Subjt:  PFHLQQSAPAPAAPQYPSPYVAPPGP-PPVPLPVASVYPAPAP-----APAVYTLPQYQQAQQLFQRD------------AQTITPEALESVKAALASSE

Query:  IEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALK
        +E   E KKKA P K       AAG SWED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A +
Subjt:  IEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALK

Query:  EMNGKYVGNRPIKLRKSNWKER
        EMNGKYVG+RPIKLRKS WK+R
Subjt:  EMNGKYVGNRPIKLRKSNWKER

Q0P5L0 RNA-binding protein 426.4e-4052.08Show/hide
Query:  APPGP----PPVPLPVASVYPAPAPAPAVY-----TLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWED
        AP GP    P +PL +A   P P P P         LP  +  + L  R      P   E     +A    E  +E KKK  P K       AAG SWED
Subjt:  APPGP----PPVPLPVASVYPAPAPAPAVY-----TLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWED

Query:  PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER
        P+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKLRKS WK+R
Subjt:  PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER

Q66KL9 RNA-binding protein 422.9e-4046.49Show/hide
Query:  PFHLQQSAPAPAAPQYPSPYVAPPGP-PPVPLPVASVYPAPAP-----APAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSE------------
        P  L +  P P       P  AP GP PP P PV    P   P     AP VYT P  ++ ++      + + P  L   K  L+  E            
Subjt:  PFHLQQSAPAPAAPQYPSPYVAPPGP-PPVPLPVASVYPAPAP-----APAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSE------------

Query:  ------IEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTD
              +E   E KKK  P K       AAG SWED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D
Subjt:  ------IEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTD

Query:  LAGALKEMNGKYVGNRPIKLRKSNWKER
           A++EMNGKYVG+RPIKLRKS WK+R
Subjt:  LAGALKEMNGKYVGNRPIKLRKSNWKER

Q91V81 RNA-binding protein 428.3e-4052.08Show/hide
Query:  APPGP----PPVPLPVASVYPAPAPAPAVY-----TLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWED
        AP GP    P +PL +A   P P P P         LP  +  + L  R      P   E     +A    E   E KKK  P K       AAG SWED
Subjt:  APPGP----PPVPLPVASVYPAPAPAPAVY-----TLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWED

Query:  PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER
        P+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKLRKS WK+R
Subjt:  PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER

Q9BTD8 RNA-binding protein 428.3e-4052.08Show/hide
Query:  APPGP----PPVPLPVASVYPAPAPAPAVY-----TLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWED
        AP GP    P +PL +A   P P P P         LP  +  + L  R      P   E     +A    E   E KKK  P K       AAG SWED
Subjt:  APPGP----PPVPLPVASVYPAPAPAPAVY-----TLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWED

Query:  PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER
        P+L EW  +D+R+FCGDLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKLRKS WK+R
Subjt:  PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER

Arabidopsis top hitse value%identityAlignment
AT1G11650.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.4e-1244.74Show/hide
Query:  DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKL
        DY +F GDL  +V D +L + F + +PS   A+VV D+ TG+TKGYGFV FS+ ++   A+ EMNG     RP+++
Subjt:  DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKL

AT1G17370.1 oligouridylate binding protein 1B3.1e-1343.04Show/hide
Query:  YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNW
        + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ E+ GK++G+R I   + NW
Subjt:  YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNW

AT1G17370.2 oligouridylate binding protein 1B3.1e-1343.04Show/hide
Query:  YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNW
        + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ E+ GK++G+R I   + NW
Subjt:  YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNW

AT3G04500.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-8771.31Show/hide
Query:  PSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGP----PPVPLPVASVYPAP-APAPAVYTLPQYQQAQQLFQRDAQTITPE
        PSS  S  SSSSSSQ+TY+  SY+  P+            Q P PY A P P    P   +P A+VYP P  P PAVY  PQYQQA QLFQRDAQTITPE
Subjt:  PSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGP----PPVPLPVASVYPAP-APAPAVYTLPQYQQAQQLFQRDAQTITPE

Query:  ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTD
        ALE+VKAALASSE EHKAETKK+AIPRKAAGQSWEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMA+V+RDKRTGKTKGYGFVSF NP D
Subjt:  ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTD

Query:  LAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS
        LA ALKEMNGKYVGNRPIKLRKS+WKERTD EA  R K       K +K S
Subjt:  LAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKVKLQPHTKEIKAS

AT3G19130.1 RNA-binding protein 47B8.9e-1346.05Show/hide
Query:  DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKL
        D  +F GDL  +V D +L + FS R+PS   A+VV D  TG++KGYGFV F +  + + AL EMNG Y  NR +++
Subjt:  DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGTCCTTCCTCGGCTCCTTCAGCTGCTTCTTCTTCATCAAGTTCCCAATTTACGTATTCAAACGGTTCTTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGC
TCCAGCACCGGCAGCCCCCCAGTATCCCTCTCCCTATGTCGCTCCTCCGGGTCCTCCTCCAGTTCCCCTCCCCGTCGCATCTGTTTATCCGGCTCCTGCTCCGGCTCCGG
CTGTCTATACTCTCCCTCAATACCAGCAGGCCCAACAATTGTTTCAAAGGGATGCTCAAACGATAACGCCGGAAGCTCTCGAGAGTGTTAAAGCTGCCCTTGCAAGTAGT
GAGATCGAGCATAAAGCAGAAACGAAGAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCT
ATTTTGTGGTGATCTTGGCAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGGTTTCCTTCATTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTA
AAACCAAGGGATATGGATTTGTTAGCTTCTCCAATCCTACTGACCTTGCTGGAGCACTTAAAGAAATGAATGGTAAGTACGTCGGGAATAGGCCGATAAAACTGAGAAAG
AGCAATTGGAAGGAGAGGACAGACTATGAAGCCCTGGGAAGACACAAGGTAAAATTACAACCACACACAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGT
AAAGGGTAGTTGGCATCCTTGTATCTCTGTTTACGTTTCGAATATAATCGTCAATCAAATGATCGGTACCGTATGTCTAACCAGTGTTCAGAAATTTGGTGAAGTTAGTA
TTTGA
mRNA sequenceShow/hide mRNA sequence
TTTGAAATAACATGTTGGGTGACCTGAATCCGAAAGTCCTAAAACTTGTAATTTGTAATTTTCAAGTGCGGTACCCGGCAAAGCTCGCGATTCCACAGCCTGAAAATCGG
AGCATTTTCTAATTGCTGTTGGCCATGGCGGGTCCTTCCTCGGCTCCTTCAGCTGCTTCTTCTTCATCAAGTTCCCAATTTACGTATTCAAACGGTTCTTACTTTCCTTT
ACCTTTCCATCTCCAGCAGTCTGCTCCAGCACCGGCAGCCCCCCAGTATCCCTCTCCCTATGTCGCTCCTCCGGGTCCTCCTCCAGTTCCCCTCCCCGTCGCATCTGTTT
ATCCGGCTCCTGCTCCGGCTCCGGCTGTCTATACTCTCCCTCAATACCAGCAGGCCCAACAATTGTTTCAAAGGGATGCTCAAACGATAACGCCGGAAGCTCTCGAGAGT
GTTAAAGCTGCCCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACGAAGAAGAAAGCTATTCCTCGCAAAGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGA
GTGGCCTGAAAATGATTACCGTCTATTTTGTGGTGATCTTGGCAATGAAGTGAATGATGACGTGCTCTCTAAAGCATTCTCACGGTTTCCTTCATTTAACATGGCTAGAG
TTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGATATGGATTTGTTAGCTTCTCCAATCCTACTGACCTTGCTGGAGCACTTAAAGAAATGAATGGTAAGTACGTCGGG
AATAGGCCGATAAAACTGAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGAAGCCCTGGGAAGACACAAGGTAAAATTACAACCACACACAAAAGAAATCAAAGCTTC
CAAAGAAGAGTATCTTGCACAAGTAAAGGGTAGTTGGCATCCTTGTATCTCTGTTTACGTTTCGAATATAATCGTCAATCAAATGATCGGTACCGTATGTCTAACCAGTG
TTCAGAAATTTGGTGAAGTTAGTATTTGATGGAGCTTTCTGTTCTCTACTGCAACTCTTTTGAAATTAAGTGATTGTGCATTAGAGAGGAGGATGTTTACTTTGAAGGAA
ACGATATTGTAAAGTGTTATGCATTTTCCATTCTCTTTGGCAATTTAATGAAGGGGAAATTAGTACTGTTTGAAAAAGTGTAGTTAGCAGTAGCAACAACTGGTTGGACA
TTATGGTTGGAATGTGCAGTGGCTGGGTTCAAATCTCAAGTCATGTGAAAGTGAAACGATATAACTATTCTTGAGCATTGAATGAGAATTGGGCCGATATTGCAACTCTT
A
Protein sequenceShow/hide protein sequence
MAGPSSAPSAASSSSSSQFTYSNGSYFPLPFHLQQSAPAPAAPQYPSPYVAPPGPPPVPLPVASVYPAPAPAPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASS
EIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRK
SNWKERTDYEALGRHKVKLQPHTKEIKASKEEYLAQVKGSWHPCISVYVSNIIVNQMIGTVCLTSVQKFGEVSI