CuGenDBv2

Gene ID	Lsi11G008880
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ARM repeat superfamily protein
Genome location	chr11:11759366..11760088
RNA-Seq Expression	Lsi11G008880
Synteny	Lsi11G008880
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600950.1 hypothetical protein SDJN03_06183, partial [Cucurbita argyrosperma subsp. sororia]

5.9e-23

56.2

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP ALTALDHWSP+VK       G+ +++   L K +    L    +VILDACCSNVPSSDEIWSY+VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKER
           MVNEM+GHLERQPRNKER
Subjt:  ---MVNEMMGHLERQPRNKER

KAG7031582.1 hypothetical protein SDJN02_05623 [Cucurbita argyrosperma subsp. argyrosperma]

5.9e-23

56.2

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP ALTALDHWSP+VK       G+ +++   L K +    L    +VILDACCSNVPSSDEIWSY+VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKER
           MVNEM+GHLERQPRNKER
Subjt:  ---MVNEMMGHLERQPRNKER

XP_011654982.1 uncharacterized protein At2g39910 [Cucumis sativus]

1.3e-22

54.47

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP  LTALDHWSP+VK       G+ +L+   L K +    L    +VILDACCSNVPSSDEIW  +VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKERCV
           MVNEM+GHLERQPRNKERC+
Subjt:  ---MVNEMMGHLERQPRNKERCV

XP_022156900.1 uncharacterized protein At2g39910 [Momordica charantia]

1.7e-22

55.37

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP ALTALDHWSP+VK       G+ +++   L K +    L    +VILDACCSNVPSSDEIW Y+VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKER
           MVNEM+GHLERQPRNKER
Subjt:  ---MVNEMMGHLERQPRNKER

XP_023549283.1 uncharacterized protein At2g39910 [Cucurbita pepo subsp. pepo]

2.3e-22

55.37

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP ALTALDHWSP+VK       G+ +++   L K +    L    +VILDACCSNVPSSDEIW Y+VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKER
           MVNEM+GHLERQPRNKER
Subjt:  ---MVNEMMGHLERQPRNKER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM16 Uncharacterized protein

6.4e-23

54.47

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP  LTALDHWSP+VK       G+ +L+   L K +    L    +VILDACCSNVPSSDEIW  +VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKERCV
           MVNEM+GHLERQPRNKERC+
Subjt:  ---MVNEMMGHLERQPRNKERCV

A0A1S3CK85 uncharacterized protein At2g39910

1.4e-22

55.37

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP  LTALDHWSP+VK       G+ +L+   L K +    L    +VILDACCSNVPSSDEIW Y+VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKER
           MVNEM+GHLERQPRNKER
Subjt:  ---MVNEMMGHLERQPRNKER

A0A5A7T3G7 Putative ARM repeat superfamily protein

1.4e-22

55.37

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP  LTALDHWSP+VK       G+ +L+   L K +    L    +VILDACCSNVPSSDEIW Y+VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKER
           MVNEM+GHLERQPRNKER
Subjt:  ---MVNEMMGHLERQPRNKER

A0A6J1DRM5 uncharacterized protein At2g39910

8.4e-23

55.37

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP ALTALDHWSP+VK       G+ +++   L K +    L    +VILDACCSNVPSSDEIW Y+VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKER
           MVNEM+GHLERQPRNKER
Subjt:  ---MVNEMMGHLERQPRNKER

A0A6J1JJB6 uncharacterized protein At2g39910

1.4e-22

55.37

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Query:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------
        I YP LGKLCNLVIP ALTALDHWSP+VK       G+ + +   L K +    L    +VILDACCSNVPSSDEIW Y+VEM                 
Subjt:  IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEM-----------------

Query:  ---MVNEMMGHLERQPRNKER
           MVNEM+GHLERQPRNKER
Subjt:  ---MVNEMMGHLERQPRNKER

SwissProt top hits

e value

%identity

Alignment

Q8GXP4 Uncharacterized protein At2g39910

2.7e-18

45.76

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Query:  PPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEMMV------------------
        P L K CNLV+P ALTALDHWSP+VK       G+ ++    L K +    L    +V+LDACC N+ S DEIW ++VE+ V                  
Subjt:  PPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEMMV------------------

Query:  --NEMMGHLERQPRNKER
          NEM+GHLERQPRNKER
Subjt:  --NEMMGHLERQPRNKER

Arabidopsis top hits

e value

%identity

Alignment

AT2G39910.1 ARM repeat superfamily protein

1.9e-19

45.76

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Query:  PPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEMMV------------------
        P L K CNLV+P ALTALDHWSP+VK       G+ ++    L K +    L    +V+LDACC N+ S DEIW ++VE+ V                  
Subjt:  PPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSL---IEVILDACCSNVPSSDEIWSYIVEMMV------------------

Query:  --NEMMGHLERQPRNKER
          NEM+GHLERQPRNKER
Subjt:  --NEMMGHLERQPRNKER

Sequences

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CDS sequence

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ATTGGTTATCCACCTTTGGGGAAGTTGTGTAATTTGGTGATTCCTTATGCATTGACTGCTCTTGATCATTGGTCACCGAAAGTCAAAGTAAGCATTTTGATTTCCCTGGG
TAGGAAATTGTTAGCTTTATTCATCTTACATAAAATGTTAATGTTGCAGAGTTTGATTGAAGTGATTCTTGATGCGTGTTGCTCAAATGTCCCTTCAAGTGATGAGATAT
GGTCTTATATTGTTGAGATGATGGTTAATGAGATGATGGGTCATTTGGAGCGACAGCCAAGAAATAAGGAACGTTGTGTATTGCATGATTTTAACACATTGAATCTCTTT
TCAACTGTATGGATTTGA

mRNA sequence

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Protein sequence

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IGYPPLGKLCNLVIPYALTALDHWSPKVKVSILISLGRKLLALFILHKMLMLQSLIEVILDACCSNVPSSDEIWSYIVEMMVNEMMGHLERQPRNKERCVLHDFNTLNLF
STVWI

Lsi11G008880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome