CuGenDBv2

Gene ID	Lsi11G008890
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Peroxisome biogenesis protein 12
Genome location	chr11:11768598..11774252
RNA-Seq Expression	Lsi11G008890
Synteny	Lsi11G008890
Gene Ontology terms	GO:0006513 - protein monoubiquitination (biological process) GO:0016558 - protein import into peroxisome matrix (biological process) GO:0005779 - integral component of peroxisomal membrane (cellular component) GO:1990429 - peroxisomal importomer complex (cellular component) GO:0004842 - ubiquitin-protein transferase activity (molecular function) GO:0008022 - protein C-terminus binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR006845 - Pex, N-terminal IPR017375 - Peroxisome assembly protein 12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0049977.1 peroxisome biogenesis protein 12 [Cucumis melo var. makuwa]

6.8e-84

78.83

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Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRRAVNV++KKED+RSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEG NDAEIYEVRGD VVPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTLGVETS        L  RV  + Q   G   +CY               PW      GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLKV
        SRISKIRSHERERLRGPPWLKV
Subjt:  SRISKIRSHERERLRGPPWLKV

XP_004152815.1 peroxisome biogenesis protein 12 [Cucumis sativus]

7.6e-83

77.83

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Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRRAVNV++KKED+RSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKERE RLQASLWGDDNEG NDAEIYEVRGD+VVPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTLGVETS        +  RV  + Q   G   +CY               PW      GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIRSHERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

XP_008441822.1 PREDICTED: peroxisome biogenesis protein 12 [Cucumis melo]

2.0e-83

78.73

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRRAVNV++KKED+RSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEG NDAEIYEVRGD VVPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTLGVETS        L  RV  + Q   G   +CY               PW      GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIRSHERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

XP_038890543.1 peroxisome biogenesis protein 12 isoform X1 [Benincasa hispida]

2.6e-83

78.28

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Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRRAVNVK+KKED+RSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEG NDAEIY+VRGDSVVPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTLGVETS        +  RV  + Q   G   +CY               PW      GLSFAYQLLYLLDATGFYSLGLQVIGVHVCR TGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIRSHERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

XP_038890544.1 peroxisome biogenesis protein 12 isoform X2 [Benincasa hispida]

2.6e-83

78.28

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRRAVNVK+KKED+RSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEG NDAEIY+VRGDSVVPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTLGVETS        +  RV  + Q   G   +CY               PW      GLSFAYQLLYLLDATGFYSLGLQVIGVHVCR TGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIRSHERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJL9 Peroxisome biogenesis protein 12

3.7e-83

77.83

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRRAVNV++KKED+RSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKERE RLQASLWGDDNEG NDAEIYEVRGD+VVPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTLGVETS        +  RV  + Q   G   +CY               PW      GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIRSHERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

A0A1S3B4B4 Peroxisome biogenesis protein 12

9.6e-84

78.73

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRRAVNV++KKED+RSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEG NDAEIYEVRGD VVPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTLGVETS        L  RV  + Q   G   +CY               PW      GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIRSHERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

A0A5D3C955 Peroxisome biogenesis protein 12

3.3e-84

78.83

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRRAVNV++KKED+RSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEG NDAEIYEVRGD VVPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTLGVETS        L  RV  + Q   G   +CY               PW      GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLKV
        SRISKIRSHERERLRGPPWLKV
Subjt:  SRISKIRSHERERLRGPPWLKV

A0A6J1EV91 Peroxisome biogenesis protein 12

1.8e-77

75.11

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRR VNVK+KKEDSRSVSGDGIQHRGL KHQKVLSV FLVVLPYFKSKLH+IYNKEREARLQASLWGDDNE  NDAEIY+VRGD +VPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTL VE S        +  RV  + Q   G   ACY               PW      GLSF YQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIRSHERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

A0A6J1K3G6 Peroxisome biogenesis protein 12

1.5e-76

73.76

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        DASFSESLYGLRRR VNVK+KKEDSRSVSGDGIQHRGL KHQKVLSV FLVVLPYFKSKLH+IYNKERE RLQASLWGDDNE  ND+E+Y+VRGD +VPT
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
        RTL VE S        +  RV  + Q   G   ACY               PW      GLSF YQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIRSHERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

SwissProt top hits

e value

%identity

Alignment

Q9M841 Peroxisome biogenesis protein 12

1.6e-59

56.56

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        D SF+ESLYGLRR++  ++L+K+ +R  S + +QH GLEK Q++LSV FLVVLPYFKSKLH+IYNKEREARL+ SLWG +++G ++A+ +    DS+V  
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
           G E          L  RV L A     F+  CY               PW      GLSF YQLLYLLDATGFYSLGLQ +G+ VCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIR+HERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

Arabidopsis top hits

e value

%identity

Alignment

AT3G04460.1 peroxin-12

1.1e-60

56.56

Show/hide

Query:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT
        D SF+ESLYGLRR++  ++L+K+ +R  S + +QH GLEK Q++LSV FLVVLPYFKSKLH+IYNKEREARL+ SLWG +++G ++A+ +    DS+V  
Subjt:  DASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPT

Query:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS
           G E          L  RV L A     F+  CY               PW      GLSF YQLLYLLDATGFYSLGLQ +G+ VCRATGQELMDTS
Subjt:  RTLGVETSKIHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQI-GLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTS

Query:  SRISKIRSHERERLRGPPWLK
        SRISKIR+HERERLRGPPWLK
Subjt:  SRISKIRSHERERLRGPPWLK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGCTTCATTTTCTGAATCCCTATATGGCTTGAGAAGAAGAGCTGTAAATGTAAAACTAAAGAAGGAAGATTCTCGTTCAGTCTCTGGTGATGGTATTCAACATAG
AGGATTAGAAAAGCATCAAAAAGTTCTTTCTGTTGCTTTCTTGGTTGTATTGCCTTATTTCAAGTCGAAGTTGCACTCAATTTACAATAAGGAAAGGGAGGCCAGGCTTC
AAGCAAGTTTATGGGGTGATGATAATGAAGGATTAAATGATGCTGAAATTTATGAAGTGAGAGGTGACTCTGTTGTTCCTACTAGAACTTTGGGAGTTGAAACATCGAAG
ATTCATCTGGTCTCCCCTCACCTAGTTTTCAGAGTCCCTTTGCAAGCTCAAGATGCCTATGGTTTTCTTGTGGCCTGCTATCCTGGAGGTCTCATCAGAAGGAGAAAGTC
TAGAAACCCAATCTCTCCATGGTTTTTAGTCCAAATTGGTCTATCGTTTGCTTATCAGCTGTTATATTTGTTGGATGCTACTGGATTCTATTCACTAGGACTGCAGGTCA
TTGGAGTTCATGTATGTCGGGCTACAGGACAAGAGCTGATGGACACATCATCTAGAATTTCAAAGATACGAAGCCATGAGCGTGAGCGACTACGTGGTCCTCCTTGGTTG
AAGGTATAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDASFSESLYGLRRRAVNVKLKKEDSRSVSGDGIQHRGLEKHQKVLSVAFLVVLPYFKSKLHSIYNKEREARLQASLWGDDNEGLNDAEIYEVRGDSVVPTRTLGVETSK
IHLVSPHLVFRVPLQAQDAYGFLVACYPGGLIRRRKSRNPISPWFLVQIGLSFAYQLLYLLDATGFYSLGLQVIGVHVCRATGQELMDTSSRISKIRSHERERLRGPPWL
KV

Lsi11G008890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome