; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G008900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G008900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPeroxisome biogenesis protein 12
Genome locationchr11:11775407..11779698
RNA-Seq ExpressionLsi11G008900
SyntenyLsi11G008900
Gene Ontology termsGO:0006513 - protein monoubiquitination (biological process)
GO:0016558 - protein import into peroxisome matrix (biological process)
GO:0005779 - integral component of peroxisomal membrane (cellular component)
GO:1990429 - peroxisomal importomer complex (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0008022 - protein C-terminus binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR017375 - Peroxisome assembly protein 12


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598946.1 Peroxisome biogenesis protein 12, partial [Cucurbita argyrosperma subsp. sororia]8.0e-3390.79Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPITLMPAN DHIRRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

KAG7029900.1 Peroxisome biogenesis protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-3390.79Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPITLMPAN DHIRRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

XP_022929775.1 peroxisome biogenesis protein 12 [Cucurbita moschata]8.0e-3390.79Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPITLMPAN DHIRRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

XP_022996952.1 peroxisome biogenesis protein 12 [Cucurbita maxima]8.0e-3390.79Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPITLMPAN DHIRRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

XP_023546945.1 peroxisome biogenesis protein 12 [Cucurbita pepo subsp. pepo]8.0e-3390.79Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPITLMPAN DHIRRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

TrEMBL top hitse value%identityAlignment
A0A0A0LJL9 Peroxisome biogenesis protein 128.7e-3389.47Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCS+KRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPAN DH+RRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

A0A1S3B4B4 Peroxisome biogenesis protein 128.7e-3389.47Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCS+KRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPAN DH+RRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

A0A6J1D9B7 Peroxisome biogenesis protein 121.1e-3289.47Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCSEKR NPSV+TVSGFVFCYTCIFKYISQYKRCPITLMPAN DHIRRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

A0A6J1EV91 Peroxisome biogenesis protein 123.9e-3390.79Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPITLMPAN DHIRRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

A0A6J1K3G6 Peroxisome biogenesis protein 123.9e-3390.79Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
        P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPITLMPAN DHIRRLFHDM
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM

SwissProt top hitse value%identityAlignment
A4FUD4 Peroxisome assembly protein 124.8e-1235.16Show/hide
Query:  YAGADLHALSSLGGQPSHGP---LLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLF
        Y+  +   + SL   P+  P   L    +   LP  +T+CPLC + R N +V+  SG+VFCY C+F Y+  ++ CPIT  P    H+ +L+
Subjt:  YAGADLHALSSLGGQPSHGP---LLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLF

Q19189 Putative peroxisome assembly protein 121.5e-1345.21Show/hide
Query:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLF
        P H  ++   E + L  N+  CP+C +KR N + + VSG+VFCYTCI +Y++ Y +CP+T  PAN  H+ RLF
Subjt:  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLF

Q54N40 Putative peroxisome assembly protein 121.5e-1343.08Show/hide
Query:  AKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLF
        A  G+ +P ++ +CPLC ++R NP++   SGFVFCY CIF Y++++ +CPIT +P N + +R+++
Subjt:  AKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLF

Q8VC48 Peroxisome assembly protein 121.6e-1236.26Show/hide
Query:  YAGADLHALSSLGGQPSHGP---LLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLF
        Y+  +  A+ SL   P+  P   L    +   LP  +T+CPLC + R N +V+  SG+VFCY C+F Y+  ++ CPIT  P    H+ +L+
Subjt:  YAGADLHALSSLGGQPSHGP---LLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLF

Q9M841 Peroxisome biogenesis protein 124.0e-2775Show/hide
Query:  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHD
        +AKEGIPLPP+R++C LC +KRANPSVVTVSGFVFCY+C+FKY+S+YKRCP+TL+PA+ D IRRLF D
Subjt:  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHD

Arabidopsis top hitse value%identityAlignment
AT3G04460.1 peroxin-122.9e-2875Show/hide
Query:  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHD
        +AKEGIPLPP+R++C LC +KRANPSVVTVSGFVFCY+C+FKY+S+YKRCP+TL+PA+ D IRRLF D
Subjt:  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTCGAAGGACTTGCAGGTGTAATTTATGGAGTTGTACAGGGTCCATACTATTCTCGTATTCCAGCAGTCATCAACGGAGTGGAGGCATATTTAGTTTTGGAGAG
CGGGGCGTGGATGGGTGGGATGCATGAGTTTGATGAAACGTCGCCCACCCCATCATACGCTGGCGCTGATTTGCACGCACTTAGTTCACTGGGTGGGCAGCCCAGCCATG
GGCCGCTGTTGGTAGCCAAGGAAGGGATTCCACTGCCGCCCAACAGAACAATTTGCCCTTTGTGCTCAGAGAAACGAGCCAATCCGTCAGTTGTCACTGTTTCTGGCTTT
GTCTTTTGTTACACCTGCATCTTCAAGTATATTTCACAGTACAAGCGCTGCCCAATCACATTAATGCCTGCAAATGCTGATCACATTAGGAGGCTCTTCCATGATATGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTCGAAGGACTTGCAGGTGTAATTTATGGAGTTGTACAGGGTCCATACTATTCTCGTATTCCAGCAGTCATCAACGGAGTGGAGGCATATTTAGTTTTGGAGAG
CGGGGCGTGGATGGGTGGGATGCATGAGTTTGATGAAACGTCGCCCACCCCATCATACGCTGGCGCTGATTTGCACGCACTTAGTTCACTGGGTGGGCAGCCCAGCCATG
GGCCGCTGTTGGTAGCCAAGGAAGGGATTCCACTGCCGCCCAACAGAACAATTTGCCCTTTGTGCTCAGAGAAACGAGCCAATCCGTCAGTTGTCACTGTTTCTGGCTTT
GTCTTTTGTTACACCTGCATCTTCAAGTATATTTCACAGTACAAGCGCTGCCCAATCACATTAATGCCTGCAAATGCTGATCACATTAGGAGGCTCTTCCATGATATGTG
AAGAACTTGAGGGACATAATAATTCAAGGATTAATGGCTGCCATCTTCTCAAAGATCTAGGAGACTTCTTGTTGGCAAATCTGCAGACTTGAGGAAATAAACTTTACAAT
TGTTCATTATGTAGTTTATAATAATTCTTGATGGTTGAAACTATCTATCTATAGAGTATAGGATATGAAATCACTAGTTATATAGTTCTTAGTAATATGCTGTTTAGGAT
TATAACAAGGTTTCAATTTTTTTGAAATATCAAAGAATATATCAGATGTTGTAAAAAAAATTTATGAAAACCAAGATGCATCTATAAATTCGATTAACAAATGATGATAT
TACACAT
Protein sequenceShow/hide protein sequence
MGVEGLAGVIYGVVQGPYYSRIPAVINGVEAYLVLESGAWMGGMHEFDETSPTPSYAGADLHALSSLGGQPSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGF
VFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM