; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G008980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G008980
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent helicase ATRX
Genome locationchr11:11972627..11973109
RNA-Seq ExpressionLsi11G008980
SyntenyLsi11G008980
Gene Ontology termsGO:0000781 - chromosome, telomeric region (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR044574 - ATPase ARIP4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98677.1 protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo var. makuwa]2.0e-6194.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

XP_008441780.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Cucumis melo]2.0e-6194.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

XP_008441786.1 PREDICTED: protein CHROMATIN REMODELING 20 isoform X4 [Cucumis melo]2.0e-6194.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

XP_011649018.1 protein CHROMATIN REMODELING 20 isoform X2 [Cucumis sativus]2.0e-6194.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

XP_031736981.1 protein CHROMATIN REMODELING 20 isoform X3 [Cucumis sativus]2.0e-6194.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

TrEMBL top hitse value%identityAlignment
A0A1S3B484 ATP-dependent helicase ATRX9.7e-6294.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

A0A1S3B498 ATP-dependent helicase ATRX9.7e-6294.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

A0A1S3B4Z9 ATP-dependent helicase ATRX9.7e-6294.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

A0A1S3B502 ATP-dependent helicase ATRX9.7e-6294.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

A0A5D3BHT1 Protein CHROMATIN REMODELING 20 isoform X19.7e-6294.49Show/hide
Query:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK
        RWVANYHEHETLLQENEEEKLSKEEQDMAWEVY+KSLEWEEVQKV PGDFISEQKLTTSN AHP P+TIDLAQSRARNRF+SRKCTNLSHLLTLRSQGTK
Subjt:  RWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTK

Query:  VGCSTVCGECAQEISWEDLNRVAKLGK
        VGCSTVCGECAQEISWEDLNR AKLGK
Subjt:  VGCSTVCGECAQEISWEDLNRVAKLGK

SwissProt top hitse value%identityAlignment
F4HW51 Protein CHROMATIN REMODELING 202.3e-3154.03Show/hide
Query:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV
        W++++HEHETLLQENEEE+L+KEE+DMAWEVY+++LEWEEVQ+VP  +     K + S    P+P+     +   R+RF++R CT ++H LTL SQG KV
Subjt:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV

Query:  GCSTVCGECAQEISWEDLNRVAKL
        G STVCGEC + I WED+   +KL
Subjt:  GCSTVCGECAQEISWEDLNRVAKL

Arabidopsis top hitse value%identityAlignment
AT1G08600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.6e-3254.03Show/hide
Query:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV
        W++++HEHETLLQENEEE+L+KEE+DMAWEVY+++LEWEEVQ+VP  +     K + S    P+P+     +   R+RF++R CT ++H LTL SQG KV
Subjt:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV

Query:  GCSTVCGECAQEISWEDLNRVAKL
        G STVCGEC + I WED+   +KL
Subjt:  GCSTVCGECAQEISWEDLNRVAKL

AT1G08600.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.6e-3254.03Show/hide
Query:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV
        W++++HEHETLLQENEEE+L+KEE+DMAWEVY+++LEWEEVQ+VP  +     K + S    P+P+     +   R+RF++R CT ++H LTL SQG KV
Subjt:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV

Query:  GCSTVCGECAQEISWEDLNRVAKL
        G STVCGEC + I WED+   +KL
Subjt:  GCSTVCGECAQEISWEDLNRVAKL

AT1G08600.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.6e-3254.03Show/hide
Query:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV
        W++++HEHETLLQENEEE+L+KEE+DMAWEVY+++LEWEEVQ+VP  +     K + S    P+P+     +   R+RF++R CT ++H LTL SQG KV
Subjt:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV

Query:  GCSTVCGECAQEISWEDLNRVAKL
        G STVCGEC + I WED+   +KL
Subjt:  GCSTVCGECAQEISWEDLNRVAKL

AT1G08600.4 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.6e-3254.03Show/hide
Query:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV
        W++++HEHETLLQENEEE+L+KEE+DMAWEVY+++LEWEEVQ+VP  +     K + S    P+P+     +   R+RF++R CT ++H LTL SQG KV
Subjt:  WVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRARNRFISRKCTNLSHLLTLRSQGTKV

Query:  GCSTVCGECAQEISWEDLNRVAKL
        G STVCGEC + I WED+   +KL
Subjt:  GCSTVCGECAQEISWEDLNRVAKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTGTGATTATGCAGTTTTCATGTTCAATATTCTTAGTATCGAAATTCTTTCACCAAATTCCATGTTATATAGTATTGATGCACTCCCTGTATTCAGGTGGGTTGC
CAATTACCACGAGCACGAAACGCTTCTCCAAGAGAATGAAGAAGAGAAACTATCTAAGGAGGAGCAAGACATGGCATGGGAAGTATACAAAAAATCATTAGAATGGGAGG
AAGTGCAGAAAGTTCCACCAGGGGATTTTATATCTGAGCAAAAGCTAACCACGTCGAATATTGCCCATCCTGTACCCAAGACTATCGATCTGGCACAATCAAGAGCAAGG
AACCGATTCATTTCTCGTAAATGCACAAATCTTTCCCATTTGCTGACACTCAGAAGTCAGGGGACAAAGGTTGGTTGTAGTACTGTTTGTGGGGAATGTGCACAGGAAAT
AAGCTGGGAAGACCTCAACAGAGTTGCCAAGCTAGGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTGTGATTATGCAGTTTTCATGTTCAATATTCTTAGTATCGAAATTCTTTCACCAAATTCCATGTTATATAGTATTGATGCACTCCCTGTATTCAGGTGGGTTGC
CAATTACCACGAGCACGAAACGCTTCTCCAAGAGAATGAAGAAGAGAAACTATCTAAGGAGGAGCAAGACATGGCATGGGAAGTATACAAAAAATCATTAGAATGGGAGG
AAGTGCAGAAAGTTCCACCAGGGGATTTTATATCTGAGCAAAAGCTAACCACGTCGAATATTGCCCATCCTGTACCCAAGACTATCGATCTGGCACAATCAAGAGCAAGG
AACCGATTCATTTCTCGTAAATGCACAAATCTTTCCCATTTGCTGACACTCAGAAGTCAGGGGACAAAGGTTGGTTGTAGTACTGTTTGTGGGGAATGTGCACAGGAAAT
AAGCTGGGAAGACCTCAACAGAGTTGCCAAGCTAGGGAAGTGA
Protein sequenceShow/hide protein sequence
MWCDYAVFMFNILSIEILSPNSMLYSIDALPVFRWVANYHEHETLLQENEEEKLSKEEQDMAWEVYKKSLEWEEVQKVPPGDFISEQKLTTSNIAHPVPKTIDLAQSRAR
NRFISRKCTNLSHLLTLRSQGTKVGCSTVCGECAQEISWEDLNRVAKLGK