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Lsi11G009180 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G009180
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUPF0047 protein YjbQ
Genome locationchr11:12782306..12783279
RNA-Seq ExpressionLsi11G009180
SyntenyLsi11G009180
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001602 - Uncharacterised protein family UPF0047
IPR035917 - YjbQ-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591177.1 hypothetical protein SDJN03_13523, partial [Cucurbita argyrosperma subsp. sororia]2.3e-5390.68Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA LLA+QPLRVK  W +NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKI+KEIG+DLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DVRSDTETFLN IVPE
Subjt:  DADVRSDTETFLNKIVPE

KAG7024064.1 yjbQ [Cucurbita argyrosperma subsp. argyrosperma]2.5e-6089.55Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKI+KEIG+DLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPEVSLLSALIICNCHSSR
        D+DVRSDTETFLN IVPEVSLLSA IICN H S+
Subjt:  DADVRSDTETFLNKIVPEVSLLSALIICNCHSSR

XP_008453044.1 PREDICTED: UPF0047 protein YjbQ [Cucumis melo]2.8e-5189.83Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPSLMAAAGPKWAQKTVTL PHRRGCHLITPKI+KEIGQDLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DV+SDTETFLNKIVPE
Subjt:  DADVRSDTETFLNKIVPE

XP_022936473.1 uncharacterized protein LOC111443082 [Cucurbita moschata]6.0e-5491.53Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKI+KEIG+DLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DVRSDTETFLN IVPE
Subjt:  DADVRSDTETFLNKIVPE

XP_022976235.1 uncharacterized protein LOC111476694 [Cucurbita maxima]2.5e-5290.68Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA LLA+QPLRVK   S+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKI+KEIG DLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DVRSDTETFLN IVPE
Subjt:  DADVRSDTETFLNKIVPE

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q6 Uncharacterized protein8.7e-5188.14Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPS MAAAGPKWAQKTVTL PHRRGCHLITPKI+KEIGQDLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DV++DTETFLNKIVPE
Subjt:  DADVRSDTETFLNKIVPE

A0A1S3BUP9 UPF0047 protein YjbQ1.3e-5189.83Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPSLMAAAGPKWAQKTVTL PHRRGCHLITPKI+KEIGQDLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DV+SDTETFLNKIVPE
Subjt:  DADVRSDTETFLNKIVPE

A0A5D3D8K7 UPF0047 protein YjbQ1.3e-5189.83Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPSLMAAAGPKWAQKTVTL PHRRGCHLITPKI+KEIGQDLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DV+SDTETFLNKIVPE
Subjt:  DADVRSDTETFLNKIVPE

A0A6J1FDC5 uncharacterized protein LOC1114430822.9e-5491.53Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKI+KEIG+DLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DVRSDTETFLN IVPE
Subjt:  DADVRSDTETFLNKIVPE

A0A6J1IIX0 uncharacterized protein LOC1114766941.2e-5290.68Show/hide
Query:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY
        MQGA LLA+QPLRVK   S+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKI+KEIG DLSEFKCGLAHIFLQHTSASLTINENY
Subjt:  MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENY

Query:  DADVRSDTETFLNKIVPE
        D+DVRSDTETFLN IVPE
Subjt:  DADVRSDTETFLNKIVPE

SwissProt top hitse value%identityAlignment
O14155 UPF0047 protein C4A8.02c5.9e-1247.89Show/hide
Query:  QKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE
        Q+ +TL    +G ++IT  +VK++  +L  F  G  + F+QHTSA+LTINEN+DAD R+D    L+KIVPE
Subjt:  QKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE

P0A2L1 UPF0047 protein YjbQ1.1e-1047.95Show/hide
Query:  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE
        W Q+T+TL    RG HLIT +I  ++   L   + GL H+ L HTSASLT+NEN D  VR+D E    K VP+
Subjt:  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE

P0A2L2 UPF0047 protein YjbQ1.1e-1047.95Show/hide
Query:  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE
        W Q+T+TL    RG HLIT +I  ++   L   + GL H+ L HTSASLT+NEN D  VR+D E    K VP+
Subjt:  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE

P0AF48 UPF0047 protein YjbQ9.1e-1349.32Show/hide
Query:  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE
        W QKT+TL    RG HL+T +I+ ++  D+     GL H+ LQHTSASLT+NEN D  VR D E F  + VP+
Subjt:  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE

P0AF49 UPF0047 protein YjbQ9.1e-1349.32Show/hide
Query:  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE
        W QKT+TL    RG HL+T +I+ ++  D+     GL H+ LQHTSASLT+NEN D  VR D E F  + VP+
Subjt:  WAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTETFLNKIVPE

Arabidopsis top hitse value%identityAlignment
AT1G21065.1 unknown protein2.5e-3464.81Show/hide
Query:  PLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTET
        PLRV+S  +         A   +   S+ +++G KWAQKT+TLPP RRGCHLITPKI+KEI +DLS+F CGLAH+FLQHTSASLTINENYD DV++DTET
Subjt:  PLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTET

Query:  FLNKIVPE
        FLN+IVPE
Subjt:  FLNKIVPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGCGCTACTCTCTTGGCTTCACAACCACTCCGCGTAAAGTCGTCGTGGAGCAGCAATTCCAGTACTGGTAATCCCTCCGCCACCGCAGGTTCTGGCAATCCAAG
CTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGATAGTGAAGGAAATTGGGCAAG
ACTTGTCAGAATTCAAATGTGGCCTTGCTCATATCTTCTTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATGCGGATGTTCGGAGTGATACTGAAACC
TTCCTCAACAAGATAGTGCCTGAAGTTAGTTTGCTATCCGCACTTATCATTTGCAACTGTCATTCGTCGCGAGCTATCCCATTTTGA
mRNA sequenceShow/hide mRNA sequence
TCCATGCCTACAAAAATTGTCATTCCATTTTGATTTTTTTGATGGACGTGGTTGTGATAGCAGCGTGAAGGCGCGTCATTTCCATGTATCATAGGCGGTTGGGCTTTGCG
GATGAGCGGCAACTGTAGGTTGTGTGGGCTCTAGGTTACAAAAAAAAAATGCAAGGCGCTACTCTCTTGGCTTCACAACCACTCCGCGTAAAGTCGTCGTGGAGCAGCAA
TTCCAGTACTGGTAATCCCTCCGCCACCGCAGGTTCTGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGC
GGGGCTGTCATCTCATCACCCCGAAGATAGTGAAGGAAATTGGGCAAGACTTGTCAGAATTCAAATGTGGCCTTGCTCATATCTTCTTGCAGCATACGAGTGCCTCTCTT
ACCATCAATGAAAACTATGATGCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAAGATAGTGCCTGAAGTTAGTTTGCTATCCGCACTTATCATTTGCAACTGTCA
TTCGTCGCGAGCTATCCCATTTTGA
Protein sequenceShow/hide protein sequence
MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKIVKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDADVRSDTET
FLNKIVPEVSLLSALIICNCHSSRAIPF