; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G009390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G009390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMannan endo-1,4-beta-mannosidase
Genome locationchr11:13855385..13878229
RNA-Seq ExpressionLsi11G009390
SyntenyLsi11G009390
Gene Ontology termsGO:0071704 - organic substance metabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016985 - mannan endo-1,4-beta-mannosidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042984.1 endoglucanase-like [Cucumis melo var. makuwa]1.3e-4155.31Show/hide
Query:  GVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE
        GVKN EE FGVLDS FT  KN K FLQRFQL+QTKLQ                                                    GSILCLK +G 
Subjt:  GVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE

Query:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHL
        GL P LS+DCSSQQS WKY SNAKLQ AT+DEQGQALCLQR +HSHQIVT KC+C NDS+CQ DPQS+WFTLVPSN+ L
Subjt:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHL

KAE8648503.1 hypothetical protein Csa_009407 [Cucumis sativus]2.0e-5061.11Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE
        EGVKN EETFGVLD+KFTNVKNPKFLQ+FQL+QTKLQ                                                    GSILCL+ VG+
Subjt:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE

Query:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHLN
        GL P LSKDCSSQQSAWKYASNAKLQ AT+DE+GQALCLQR +HSHQI+T KCMC NDSECQGDPQS+WFTLVPSNVHLN
Subjt:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHLN

KAE8648505.1 hypothetical protein Csa_007897 [Cucumis sativus]3.2e-4860.45Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE
        EGVKN EETFGVLDSKFTNVKNPKFLQ+FQL+QTKLQ                                                    GSILCL+ VG+
Subjt:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE

Query:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV
        GL P LSKDCSSQQSAWKYASNAKLQ AT+DE+GQALCLQR +HSHQI+T KCMC NDSECQGDPQS+WFTLVPSN+
Subjt:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV

XP_031739082.1 glycosyl hydrolase 5 family protein [Cucumis sativus]1.5e-5061.67Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE
        EGVKN EETFGVLDSKFTNVKNPKFLQ+FQL+QTKLQ                                                    GSILCL+ VG+
Subjt:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE

Query:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHLN
        GL P LSKDCSSQQSAWKYASNAKLQ AT+DEQGQALCLQR +HSHQI+T KCMC NDSECQGDPQS+WFTLVPSNVHL+
Subjt:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHLN

XP_038874277.1 glycosyl hydrolase 5 family protein-like [Benincasa hispida]2.0e-4255Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE
        EGVKN EE+FGV D  F + KNPKFLQRFQL+QTKLQ                                                     S+LCLK +GE
Subjt:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE

Query:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHLN
        GL P LSKDCSSQQS WKYASNAKLQ AT+D+QGQALCLQ  +HSHQIVT KCMC +DS+CQGDPQS+WFTLV SNV+LN
Subjt:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHLN

TrEMBL top hitse value%identityAlignment
A0A5A7TI19 Mannan endo-1,4-beta-mannosidase6.2e-4255.31Show/hide
Query:  GVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE
        GVKN EE FGVLDS FT  KN K FLQRFQL+QTKLQ                                                    GSILCLK +G 
Subjt:  GVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE

Query:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHL
        GL P LS+DCSSQQS WKY SNAKLQ AT+DEQGQALCLQR +HSHQIVT KC+C NDS+CQ DPQS+WFTLVPSN+ L
Subjt:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHL

A0A5A7UGS0 Mannan endo-1,4-beta-mannosidase5.3e-4154.49Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVG
        EGVKN EETFGVLDS F   KN K FLQ+FQL+Q+KLQ                                                    GSILCLK +G
Subjt:  EGVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVG

Query:  EGLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV
         GL P LS+DCSSQQS WKY SNAKLQ AT+DEQGQALCLQR +HSHQIVT KC+C NDS+CQ DPQS+WFTLVPSN+
Subjt:  EGLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV

A0A5A7UKF5 Mannan endo-1,4-beta-mannosidase5.3e-4154.49Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVG
        EGVKN EETFGVLDS F   KN K FLQ+FQL+Q+KLQ                                                    GSILCLK +G
Subjt:  EGVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVG

Query:  EGLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV
         GL P LS+DCSSQQS WKY SNAKLQ AT+DEQGQALCLQR +HSHQIVT KC+C NDS+CQ DPQS+WFTLVPSN+
Subjt:  EGLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV

A0A5D3BM14 Mannan endo-1,4-beta-mannosidase2.6e-4054.8Show/hide
Query:  GVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE
        GVKN EE FGVLDS FT  KN K FLQRFQL+QTKLQ                                                    GSILCLK +G 
Subjt:  GVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVGE

Query:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV
        GL P LS+DCSSQQS W+YASNAKLQ AT+DEQGQALCLQR +HSHQIVT KC+C  DS+CQ DPQS+WFTLVPSN+
Subjt:  GLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV

A0A5D3DAU2 Mannan endo-1,4-beta-mannosidase5.3e-4154.49Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVG
        EGVKN EETFGVLDS F   KN K FLQ+FQL+Q+KLQ                                                    GSILCLK +G
Subjt:  EGVKNTEETFGVLDSKFTNVKNPK-FLQRFQLIQTKLQ----------------------------------------------------GSILCLKVVG

Query:  EGLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV
         GL P LS+DCSSQQS WKY SNAKLQ AT+DEQGQALCLQR +HSHQIVT KC+C NDS+CQ DPQS+WFTLVPSN+
Subjt:  EGLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV

SwissProt top hitse value%identityAlignment
C0HLA0 Glycosyl hydrolase 5 family protein2.6e-0522.4Show/hide
Query:  ANMEGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ-------------------------------------------------------GSILC
        ++ + VK+ EET+G  +  ++ ++NP F+ R + IQ  +Q                                                       GS  C
Subjt:  ANMEGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQ-------------------------------------------------------GSILC

Query:  LKVVGEGLSPTLSKDCSS-QQSAWKYASNAKLQPAT----IDEQGQALCLQRTTHSHQIVTYKCMCQNDSEC--QGDPQSEWFTLVPSNVHL
        +   G GL   ++++CS+   + W   S+A+LQ  T     D + + +CL   + S  I T +C+C  DS C  + +P+ +WF ++ +N  L
Subjt:  LKVVGEGLSPTLSKDCSS-QQSAWKYASNAKLQPAT----IDEQGQALCLQRTTHSHQIVTYKCMCQNDSEC--QGDPQSEWFTLVPSNVHL

Arabidopsis top hitse value%identityAlignment
AT1G13130.1 Cellulase (glycosyl hydrolase family 5) protein1.3e-0422.86Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQG----------------------------------------------------SILCLKVVGE
        +G     E +GVLDS + +V+N  FLQ+   +Q+ LQG                                                      LCL+  G 
Subjt:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQG----------------------------------------------------SILCLKVVGE

Query:  GLSPTLSK-DCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMC-QNDSECQGDPQSEWFTLV
            T+++  CS+  S W+  S +++  A+      +LCL   T ++ +V   C C   D  C  +P S+WF ++
Subjt:  GLSPTLSK-DCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMC-QNDSECQGDPQSEWFTLV

AT3G26130.1 Cellulase (glycosyl hydrolase family 5) protein1.2e-0828.07Show/hide
Query:  TEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQG---------------------------------------------------SILCLKVVGEGLSPTL
        ++E++GVLD  +++++N   LQ    IQT   G                                                    ILCLK   +G S  L
Subjt:  TEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQG---------------------------------------------------SILCLKVVGEGLSPTL

Query:  SKDCS-SQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMC-QNDSECQGDPQSEWFTLVPS
            S S  S WK  S++K+Q ++I + G ++CL   T ++ IVT  C C + +S C  DP+S+WF LV S
Subjt:  SKDCS-SQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMC-QNDSECQGDPQSEWFTLVPS

AT3G26140.1 Cellulase (glycosyl hydrolase family 5) protein1.3e-0426.24Show/hide
Query:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQG-------------SILCLKVVGEGLSPT-LSKDCSSQQSAWKYASNAKLQPATIDEQGQALC
        EGV    E +G+LDS +  V++  FLQR  LI + LQG              +  L ++   L PT ++    ++   W Y         T+  + ++LC
Subjt:  EGVKNTEETFGVLDSKFTNVKNPKFLQRFQLIQTKLQG-------------SILCLKVVGEGLSPT-LSKDCSSQQSAWKYASNAKLQPATIDEQGQALC

Query:  LQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHL
        L+ T  +  +        +++ C     SEW T+  SN+ L
Subjt:  LQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNVHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAGGTGCACAACCATGACACAGGCGAGTGCCCATCCGAGCACCCAGACGCACAGCCGAGTGTGCGCCCCAGTCAACCCAGCGCTGCCATGCGTGCGCCCCATCC
TAAGCGCGCGCCCCATCCCATGCCCAAGTCGCATGCGCACACCAGGCCGCGCACGCCCTGCGTGCGACCAACGCTAGACGTGCAGTGTACGCGCGCGCCCGTTCAGCACG
CCTTCCCTGCATGCATGGCCACCCAGAGCCCACGCCTAGCGCGCTCGCCTGTCCCTGCGCGCGCGCCCCGTGGTCCAGACTTCTCTAGACAGTCCTGGACGCTTCTAGAA
GGCTCGGGACAACTCCAACTCCCTCGCCCAAGGCCCCGAAGCGACTGGAAGGATCTGGGAGGCGCTGGACAGTGCCAGCGCCCACGAGAAAGCCCCAGCATGGCCCAGAA
GCCTCCAAATGCCTCTGGGCAGCGCCAGATCGTGCGCCACAGCCCTGGAAATGCCAGGAAGGATCTAGAAGGGGCAAGACAGTGCCAGACTGCTCGGGAAGGCACAAGAC
TTGTCGAGAAGGTTCAAGAAAGCCCTGGAACGTGTCAGGACACTTTCAGAAGATACAATGACGGTCGGGACAAGTGCCAGAATTCTCTAGAAGAACTGGGGTGGAAGGAG
TTTTTTGAAGGGCCACAGTTGTTGAAGATCGAAGCGGTGCAAGCGACAAAGCATAGAGCAAAGATAGGCGATGAGGTGTTGTCGTTTCAAGCAGAGCCCATAAACGCGTT
ATTCAACCTACCAAATGATCCTGACGCCGAAGGCAACAGAGTCATTGAAATGTCAACACCAGAAGAGATGAAGGAGGCGTTAAAAGTGGTCGCAAAGGCGGGGACTAAAT
GGAATACATCATCCACGGGGATCAAGACCCTGTCGCCCCATAACTTGACGCCCGAAGCCAACATGGAAGGTGTGAAAAATACCGAAGAAACTTTTGGTGTCTTAGATTCT
AAGTTCACAAATGTCAAAAACCCTAAATTCCTTCAGAGGTTTCAGCTTATACAAACAAAACTTCAAGGATCTATATTGTGTTTGAAAGTTGTTGGAGAAGGGCTCTCTCC
AACTCTCTCTAAAGACTGCTCTAGCCAACAAAGTGCTTGGAAATATGCTTCAAATGCCAAGCTTCAACCAGCCACCATTGATGAACAAGGACAAGCCTTGTGTTTGCAAA
GGACTACTCATTCCCATCAAATTGTGACCTACAAGTGCATGTGTCAGAATGATTCTGAATGCCAAGGAGATCCACAAAGCGAATGGTTTACACTTGTCCCGTCAAATGTA
CATCTCAAT
mRNA sequenceShow/hide mRNA sequence
GAAGAAGGGCCAACAAGCCCCCAAGCATGTCCCATGCACATGCCAGCATGCCCCAACAAGCTGCCATGGCCGAAGGGCAGCACCCATGCTTCAGGTGCACAACCATGACA
CAGGCGAGTGCCCATCCGAGCACCCAGACGCACAGCCGAGTGTGCGCCCCAGTCAACCCAGCGCTGCCATGCGTGCGCCCCATCCTAAGCGCGCGCCCCATCCCATGCCC
AAGTCGCATGCGCACACCAGGCCGCGCACGCCCTGCGTGCGACCAACGCTAGACGTGCAGTGTACGCGCGCGCCCGTTCAGCACGCCTTCCCTGCATGCATGGCCACCCA
GAGCCCACGCCTAGCGCGCTCGCCTGTCCCTGCGCGCGCGCCCCGTGGTCCAGACTTCTCTAGACAGTCCTGGACGCTTCTAGAAGGCTCGGGACAACTCCAACTCCCTC
GCCCAAGGCCCCGAAGCGACTGGAAGGATCTGGGAGGCGCTGGACAGTGCCAGCGCCCACGAGAAAGCCCCAGCATGGCCCAGAAGCCTCCAAATGCCTCTGGGCAGCGC
CAGATCGTGCGCCACAGCCCTGGAAATGCCAGGAAGGATCTAGAAGGGGCAAGACAGTGCCAGACTGCTCGGGAAGGCACAAGACTTGTCGAGAAGGTTCAAGAAAGCCC
TGGAACGTGTCAGGACACTTTCAGAAGATACAATGACGGTCGGGACAAGTGCCAGAATTCTCTAGAAGAACTGGGGTGGAAGGAGTTTTTTGAAGGGCCACAGTTGTTGA
AGATCGAAGCGGTGCAAGCGACAAAGCATAGAGCAAAGATAGGCGATGAGGTGTTGTCGTTTCAAGCAGAGCCCATAAACGCGTTATTCAACCTACCAAATGATCCTGAC
GCCGAAGGCAACAGAGTCATTGAAATGTCAACACCAGAAGAGATGAAGGAGGCGTTAAAAGTGGTCGCAAAGGCGGGGACTAAATGGAATACATCATCCACGGGGATCAA
GACCCTGTCGCCCCATAACTTGACGCCCGAAGCCAACATGGAAGGTGTGAAAAATACCGAAGAAACTTTTGGTGTCTTAGATTCTAAGTTCACAAATGTCAAAAACCCTA
AATTCCTTCAGAGGTTTCAGCTTATACAAACAAAACTTCAAGGATCTATATTGTGTTTGAAAGTTGTTGGAGAAGGGCTCTCTCCAACTCTCTCTAAAGACTGCTCTAGC
CAACAAAGTGCTTGGAAATATGCTTCAAATGCCAAGCTTCAACCAGCCACCATTGATGAACAAGGACAAGCCTTGTGTTTGCAAAGGACTACTCATTCCCATCAAATTGT
GACCTACAAGTGCATGTGTCAGAATGATTCTGAATGCCAAGGAGATCCACAAAGCGAATGGTTTACACTTGTCCCGTCAAATGTACATCTCAAT
Protein sequenceShow/hide protein sequence
MLQVHNHDTGECPSEHPDAQPSVRPSQPSAAMRAPHPKRAPHPMPKSHAHTRPRTPCVRPTLDVQCTRAPVQHAFPACMATQSPRLARSPVPARAPRGPDFSRQSWTLLE
GSGQLQLPRPRPRSDWKDLGGAGQCQRPRESPSMAQKPPNASGQRQIVRHSPGNARKDLEGARQCQTAREGTRLVEKVQESPGTCQDTFRRYNDGRDKCQNSLEELGWKE
FFEGPQLLKIEAVQATKHRAKIGDEVLSFQAEPINALFNLPNDPDAEGNRVIEMSTPEEMKEALKVVAKAGTKWNTSSTGIKTLSPHNLTPEANMEGVKNTEETFGVLDS
KFTNVKNPKFLQRFQLIQTKLQGSILCLKVVGEGLSPTLSKDCSSQQSAWKYASNAKLQPATIDEQGQALCLQRTTHSHQIVTYKCMCQNDSECQGDPQSEWFTLVPSNV
HLN