; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G009500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G009500
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLate embryogenesis abundant protein family protein, putative
Genome locationchr11:14171764..14192726
RNA-Seq ExpressionLsi11G009500
SyntenyLsi11G009500
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598970.1 hypothetical protein SDJN03_08748, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2753.57Show/hide
Query:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV
        M S TLFKS      FGA AI RRS  S+ +L+ ASNPK IHT+PPQDGSEA DAINP ANEGM PGE+MM+DKAYSTAEH                   
Subjt:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV

Query:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC
          VSEKT ++AGM+SA+A EVSA AK+AMEA    AKD+  RAKDT + ++  S     AN  +  +C
Subjt:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC

XP_022933143.1 uncharacterized protein At4g13230 [Cucurbita moschata]4.7e-2954.76Show/hide
Query:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV
        M SSTLFKS      FGA AI RRS  S+ +L+ ASNPKFIHT+PPQDGSEA DAINP ANEGM PGE+MM+DKAYSTAEH                   
Subjt:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV

Query:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC
          VSEKT ++AGM+SA+A EVSA AK+AMEA    AKD+  RAKDT + ++  S     AN  +  +C
Subjt:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC

XP_022973925.1 uncharacterized protein At4g13230 [Cucurbita maxima]2.2e-2653.57Show/hide
Query:  MASSTLFKS------FGAA-ITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV
        M SSTLFKS      FGAA I  RS  S+ +L  ASNPKFIHT+PPQDGSEA DAINP ANEGM  GE MM+DKAYSTAEH                   
Subjt:  MASSTLFKS------FGAA-ITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV

Query:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC
          VSEKT ++AGM+SA+A EVSA AKQAMEA    AKD+  RAKD+ + ++  S     AN  +  +C
Subjt:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC

XP_023546410.1 uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo]9.8e-2752.98Show/hide
Query:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV
        M SSTLFKS      FGA AI RRS  S+ +L+ ASNPK IHT+PPQDG EA DAI P ANEGM PGE+MM+DKAYSTAEH                   
Subjt:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV

Query:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC
          VSEKT ++AGM+SA+A EVSA AK+AMEA    AKD+  RAKDT + ++  S     AN  +  +C
Subjt:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC

XP_038889268.1 uncharacterized protein At4g13230-like [Benincasa hispida]7.7e-4066.26Show/hide
Query:  MASSTLFKS------FGAAITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFVY
        MASSTLFK+      FGAAITRRST S+ TLILASNPKFIHT+  QDGSEA DAINPGANEGMMPGENMMKDKAYSTAEH                    
Subjt:  MASSTLFKS------FGAAITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFVY

Query:  YVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLS
         VSEKT ++AGMVSAKAH VSA AKQAMEAAWD+AKDT QRAKDT + ++  S     ANV S
Subjt:  YVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLS

TrEMBL top hitse value%identityAlignment
A0A2N9J2L7 Uncharacterized protein1.0e-1342.45Show/hide
Query:  FKSFGAAITRRSTISHPTLILASNPKFIH-TSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFVYYVSEKTMNVAG
        F   GAAI RR+T  +P L +ASNP+ I  +S P+  S A DA+  GAN+    G+  +K+KA+STAEH                     V++KT ++AG
Subjt:  FKSFGAAITRRSTISHPTLILASNPKFIH-TSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFVYYVSEKTMNVAG

Query:  MVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSS
        M+SA A +V+  AKQ  + AW TAKDT Q+AKDT L  +
Subjt:  MVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSS

A0A5N6QS64 Uncharacterized protein2.1e-1142.42Show/hide
Query:  AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFVYYVSEKTMNVAGMVSAKAH
        A  RRST  H   + A+ P+ IH S     S   DAI  GANEG   GE  +KDKA+STAEH                     V++KT ++AG VSA A 
Subjt:  AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFVYYVSEKTMNVAGMVSAKAH

Query:  EVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSS
        + +  AKQ  + AWDTAKDT Q+AKDT +  +
Subjt:  EVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSS

A0A6J1CSM2 uncharacterized protein At4g13230-like3.3e-2049.03Show/hide
Query:  MASSTLFKS------FGAAITRRSTISHPTLILASNPKFIHTSPPQD-----GSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFL
        MAS TL K+       GAAI RRST S+P L+L SNPKF+HT  PQD       EA DAINPGANE MMPGE+MM + AYSTA+H               
Subjt:  MASSTLFKS------FGAAITRRSTISHPTLILASNPKFIHTSPPQD-----GSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFL

Query:  SIFVYYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSS
              V EK  ++ GMV +   E+S  AKQ MEAAWD+A    QRAKDT + ++
Subjt:  SIFVYYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSS

A0A6J1F3W7 uncharacterized protein At4g132302.3e-2954.76Show/hide
Query:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV
        M SSTLFKS      FGA AI RRS  S+ +L+ ASNPKFIHT+PPQDGSEA DAINP ANEGM PGE+MM+DKAYSTAEH                   
Subjt:  MASSTLFKS------FGA-AITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV

Query:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC
          VSEKT ++AGM+SA+A EVSA AK+AMEA    AKD+  RAKDT + ++  S     AN  +  +C
Subjt:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC

A0A6J1ICL4 uncharacterized protein At4g132301.1e-2653.57Show/hide
Query:  MASSTLFKS------FGAA-ITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV
        M SSTLFKS      FGAA I  RS  S+ +L  ASNPKFIHT+PPQDGSEA DAINP ANEGM  GE MM+DKAYSTAEH                   
Subjt:  MASSTLFKS------FGAA-ITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFV

Query:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC
          VSEKT ++AGM+SA+A EVSA AKQAMEA    AKD+  RAKD+ + ++  S     AN  +  +C
Subjt:  YYVSEKTMNVAGMVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISA--ATANVLSYVRC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAAAAATAAGAAAAATGGCAAGCTCCACCCTCTTCAAAAGCTTTGGTGCTGCAATTACAAGAAGATCAACAATCTCCCACCCTACTCTCATTTTGGCTTCTAACCCTAA
ATTTATTCATACAAGTCCACCACAAGATGGGTCAGAAGCAATAGATGCCATTAACCCCGGAGCAAATGAAGGAATGATGCCTGGTGAAAATATGATGAAAGATAAGGCTT
ACTCTACTGCAGAACATGCAATGAAACTCCAAATCTTTCTTTTCTTTTTAATCTTTTTCTTATCTATTTTTGTCTATTATGTCAGTGAAAAGACAATGAATGTGGCAGGA
ATGGTAAGTGCAAAAGCACATGAGGTTTCAGCAATGGCAAAGCAAGCAATGGAAGCAGCATGGGACACAGCAAAGGACACAACCCAAAGGGCAAAAGACACCCCCTTGTC
GTCATCCACGATCAGTGCCGCTACTGCCAACGTACTGTCGTACGTCCGTTGCCCAGTTTGA
mRNA sequenceShow/hide mRNA sequence
TTAAAAATAAGAAAAATGGCAAGCTCCACCCTCTTCAAAAGCTTTGGTGCTGCAATTACAAGAAGATCAACAATCTCCCACCCTACTCTCATTTTGGCTTCTAACCCTAA
ATTTATTCATACAAGTCCACCACAAGATGGGTCAGAAGCAATAGATGCCATTAACCCCGGAGCAAATGAAGGAATGATGCCTGGTGAAAATATGATGAAAGATAAGGCTT
ACTCTACTGCAGAACATGCAATGAAACTCCAAATCTTTCTTTTCTTTTTAATCTTTTTCTTATCTATTTTTGTCTATTATGTCAGTGAAAAGACAATGAATGTGGCAGGA
ATGGTAAGTGCAAAAGCACATGAGGTTTCAGCAATGGCAAAGCAAGCAATGGAAGCAGCATGGGACACAGCAAAGGACACAACCCAAAGGGCAAAAGACACCCCCTTGTC
GTCATCCACGATCAGTGCCGCTACTGCCAACGTACTGTCGTACGTCCGTTGCCCAGTTTGA
Protein sequenceShow/hide protein sequence
LKIRKMASSTLFKSFGAAITRRSTISHPTLILASNPKFIHTSPPQDGSEAIDAINPGANEGMMPGENMMKDKAYSTAEHAMKLQIFLFFLIFFLSIFVYYVSEKTMNVAG
MVSAKAHEVSAMAKQAMEAAWDTAKDTTQRAKDTPLSSSTISAATANVLSYVRCPV