CuGenDBv2

Gene ID	Lsi11G009570
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome f
Genome location	chr11:14665290..14665799
RNA-Seq Expression	Lsi11G009570
Synteny	Lsi11G009570
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0022900 - electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR011054 - Rudiment single hybrid motif IPR024094 - Cytochrome f large domain IPR036826 - Cytochrome f large domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ASD34349.1 apocytochrome f [Actinidia kolomikta]

7.9e-55

72.19

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRP KKNILVI PV   KYSEITFPILS DP TKKDV+FLKY IYVGGN+GRGQIY  G+KSN+ VYNATAAGIVSKIIRKEK  YEITI DA++GRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD
                      GESIK DQPLTSNPNVGGFGQ DA     D  QVVDIIP G ELLVSEGESIK D
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD

QIT04063.1 cytochrome f [Luffa aegyptiaca]

1.5e-53

76.32

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+NVYNATAAGIVSKIIRKEKR YEITIVDA +GRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

THU42770.1 hypothetical protein C4D60_Mb00t09270 [Musa balbisiana]

3.0e-54

71.01

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRP K+NI+VI PV   KYSEI FPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+ VYNAT+AGIVS+I+RKEK  YEITIVDA++G Q+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V      G ELLVSEGESIKLD
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD

YP_009456159.1 cytochrome f [Lagenaria siceraria]

2.6e-53

76.32

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

YP_009752003.1 cytochrome f [Cionosicys macranthus]

2.6e-53

76.32

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q151 Cytochrome f

1.2e-53

76.32

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

A0A1Z3MIM4 Cytochrome f

3.8e-55

72.19

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRP KKNILVI PV   KYSEITFPILS DP TKKDV+FLKY IYVGGN+GRGQIY  G+KSN+ VYNATAAGIVSKIIRKEK  YEITI DA++GRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD
                      GESIK DQPLTSNPNVGGFGQ DA     D  QVVDIIP G ELLVSEGESIK D
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD

A0A218KG41 Cytochrome f

1.2e-53

76.32

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

A0A4S8I4J6 Cytochrome f

1.5e-54

71.01

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRP K+NI+VI PV   KYSEI FPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+ VYNAT+AGIVS+I+RKEK  YEITIVDA++G Q+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V      G ELLVSEGESIKLD
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD

A0A6H0EQ33 Cytochrome f

7.2e-54

76.32

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+NVYNATAAGIVSKIIRKEKR YEITIVDA +GRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

SwissProt top hits

e value

%identity

Alignment

A6MM49 Cytochrome f

7.0e-54

73.03

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+ VYNATAAGI+SKIIRKEK  YEITI DA++G Q+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

B1NWG3 Cytochrome f

7.0e-54

73.68

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP  KKDVHFLKY IYVGGN+GRGQIY DGSKSN+ VYNATAAGIVSKIIRKEK  YEITI DA+ GRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

Q09X04 Cytochrome f

2.2e-55

Show/hide

Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+NVYNAT+AGIVSKIIRKEK  YEITIVDA++GRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

Q0ZJ07 Cytochrome f

4.1e-54

73.03

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        +YRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+ VYNATAAGIVSKIIRKEK  YEITI DA++GRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP ++  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

Q2QD76 Cytochrome f

3.3e-56

76.32

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Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DGSKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

Arabidopsis top hits

e value

%identity

Alignment

ATCG00540.1 photosynthetic electron transfer A

9.3e-54

70.39

Show/hide

Query:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL
        +YRP KKNILVI PV   KYSEITFPIL+ DP T KDVHFLKY IYVGGN+GRGQIY DGSKSN+ VYNATA GI+SKI+RKEK  YEITIVDA+NGR++
Subjt:  SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL

Query:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII
                      GESIKLDQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Subjt:  --------------GESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII

Sequences

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CDS sequence

Show/hide CDS sequence

AGCTACCGTCCCACTAAAAAAAATATTCTTGTGATAAGGCCTGTTCTTGATAATAAATATAGTGAAATCACCTTTCCTATTCTTTCCCTGGACCCTGTGACTAAGAAAGA
TGTTCACTTCTTAAAATATCTCATATACGTAGGCGGGAACAAGGGAAGGGGTCAGATTTATCTCGATGGGAGTAAGAGTAATCATAATGTTTATAATGCTACAGCAGCAG
GTATAGTAAGCAAAATAATACGAAAAGAAAAAAGAAGATATGAAATAACTATAGTGGATGCAACGAATGGGCGTCAACTGGGCGAATCTATCAAACTTGATCAACCATTA
ACGAGTAATCCTAATGTGGGAGGATTTGGTCAGAGAGATGCAGAAATAGTCCATCAAGATCCATTTCAAGTGGTTGATATTATCCCTCTAGGACTAGAACTTCTTGTTTC
AGAGGGCGAATCTATCAAACTTGATTAA

mRNA sequence

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Protein sequence

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SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQLGESIKLDQPL
TSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD

Lsi11G009570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome