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Lsi11G009710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G009710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor MYB44 isoform X1
Genome locationchr11:15438519..15439289
RNA-Seq ExpressionLsi11G009710
SyntenyLsi11G009710
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138987.1 transcription factor MYB117 [Cucumis sativus]6.7e-2667.92Show/hide
Query:  SETSNEIEVISSYSCHKTSSDEENQTCET-HYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG----------VEPAFIDF
        SETSNE+EVISSYSC+KTSS+ ENQTC   HYC  Y+MT+MQQRSNY+Y NS  QIP      WDHHI+GSEGSS VSEENG          VEP FIDF
Subjt:  SETSNEIEVISSYSCHKTSSDEENQTCET-HYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG----------VEPAFIDF

Query:  LGVGGR
        LGVGGR
Subjt:  LGVGGR

XP_008441713.1 PREDICTED: transcription factor MYB44 isoform X1 [Cucumis melo]1.9e-2567.31Show/hide
Query:  SETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLG
        SETS E+EVISS+SC+KT S+ ENQTC  HY LPY+MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFIDFLG
Subjt:  SETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLG

Query:  VGGR
        VGGR
Subjt:  VGGR

XP_016899494.1 PREDICTED: transcription factor MYB44 isoform X2 [Cucumis melo]4.3e-2566.99Show/hide
Query:  ETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLGV
        ETS E+EVISS+SC+KT S+ ENQTC  HY LPY+MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFIDFLGV
Subjt:  ETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLGV

Query:  GGR
        GGR
Subjt:  GGR

XP_038890980.1 transcription factor MYB105-like [Benincasa hispida]7.9e-2767.89Show/hide
Query:  HQDSSSSETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYD-NSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG-------VEPAF
        H     SETSNE+E ISSYS HKTSSDE NQTC T+Y   Y+MT+MQQRSNYNY+ NS  QI   NTTTWDHH++GSEGSS VSEENG       VE  F
Subjt:  HQDSSSSETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYD-NSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG-------VEPAF

Query:  IDFLGVGGR
        IDFLGVGGR
Subjt:  IDFLGVGGR

TrEMBL top hitse value%identityAlignment
A0A0A0LHV6 Uncharacterized protein3.2e-2667.92Show/hide
Query:  SETSNEIEVISSYSCHKTSSDEENQTCET-HYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG----------VEPAFIDF
        SETSNE+EVISSYSC+KTSS+ ENQTC   HYC  Y+MT+MQQRSNY+Y NS  QIP      WDHHI+GSEGSS VSEENG          VEP FIDF
Subjt:  SETSNEIEVISSYSCHKTSSDEENQTCET-HYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG----------VEPAFIDF

Query:  LGVGGR
        LGVGGR
Subjt:  LGVGGR

A0A1S3B420 transcription factor MYB44 isoform X19.4e-2667.31Show/hide
Query:  SETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLG
        SETS E+EVISS+SC+KT S+ ENQTC  HY LPY+MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFIDFLG
Subjt:  SETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLG

Query:  VGGR
        VGGR
Subjt:  VGGR

A0A1S4DU28 transcription factor MYB44 isoform X22.1e-2566.99Show/hide
Query:  ETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLGV
        ETS E+EVISS+SC+KT S+ ENQTC  HY LPY+MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFIDFLGV
Subjt:  ETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLGV

Query:  GGR
        GGR
Subjt:  GGR

A0A5A7SSP0 Transcription factor MYB44 isoform X19.4e-2667.31Show/hide
Query:  SETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLG
        SETS E+EVISS+SC+KT S+ ENQTC  HY LPY+MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFIDFLG
Subjt:  SETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFIDFLG

Query:  VGGR
        VGGR
Subjt:  VGGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCAAGATTCAAGTAGTTCCGAAACAAGCAACGAAATAGAAGTTATATCGTCTTACAGTTGCCACAAAACAAGTTCGGATGAAGAAAATCAGACTTGCGAAACACA
TTATTGTCTACCATATGTCATGACCAAAATGCAACAAAGAAGCAATTACAATTACGACAACTCTCGTTACCAAATTCCAAACCATAACACAACAACATGGGATCACCATA
TTATGGGAAGTGAGGGATCATCATTGGTGAGCGAGGAAAACGGTGTCGAACCGGCGTTCATAGACTTTCTTGGAGTAGGAGGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCACCAAGATTCAAGTAGTTCCGAAACAAGCAACGAAATAGAAGTTATATCGTCTTACAGTTGCCACAAAACAAGTTCGGATGAAGAAAATCAGACTTGCGAAACACA
TTATTGTCTACCATATGTCATGACCAAAATGCAACAAAGAAGCAATTACAATTACGACAACTCTCGTTACCAAATTCCAAACCATAACACAACAACATGGGATCACCATA
TTATGGGAAGTGAGGGATCATCATTGGTGAGCGAGGAAAACGGTGTCGAACCGGCGTTCATAGACTTTCTTGGAGTAGGAGGGAGATGAAAGGGTGTTTAGAAACCCAAG
GAAAAAGGAGGGTTTATTTATTTATTTTTTTTTGGTTGCATATTCCAATCATGAGAAATGGCCTAAATGTGGGTGTGGTCCAAGATTTGGAAGAGGCCATTACAGGCAAT
AGAGCAAAAGTAAAGAGAGATGATTTGAGTTGGACTGTTGGAGTGGTGAAAAGATTTGTAGTCAGTGCCATTGAAAGCTTTATATATATAATCCCAAAACCCAAACCATC
ATTTTCTTCTTACTTGCTTGTAAGTTGTACCCTCTCTCTTTTTGCTCACATAATGAATGTGATGGCCAATGGCTTATGTTCCC
Protein sequenceShow/hide protein sequence
MHQDSSSSETSNEIEVISSYSCHKTSSDEENQTCETHYCLPYVMTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENGVEPAFIDFLGVGGR