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Lsi11G009900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G009900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPHD finger protein EHD3
Genome locationchr11:16571717..16573290
RNA-Seq ExpressionLsi11G009900
SyntenyLsi11G009900
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592138.1 PHD finger protein EHD3, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3076.6Show/hide
Query:  WNLGFSSSGQ--MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV
        W  GF  + Q  M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+LT GSECKG+ KTHVEA GQ V
Subjt:  WNLGFSSSGQ--MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV

XP_022153712.1 PHD finger protein EHD3 [Momordica charantia]3.7e-3185.37Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV
        MVIED KSNGDCTG ALEV FVK EAG+NG+GMGVLNVVT GVPGTSDGFRTYKRRK T+LTSGSECKGD KTHVEA GQL+
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV

XP_022975583.1 PHD finger protein EHD3-like [Cucurbita maxima]2.7e-2982.93Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV
        M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+LT GSECKG+ KTHVEA GQ V
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV

XP_023535868.1 PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo]2.7e-2982.93Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV
        M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+LT GSECKG+ KTHVEA GQ V
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV

XP_038897858.1 PHD finger protein EHD3 [Benincasa hispida]5.2e-3371.93Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLVDL--------GMQSCLN-
        MVIEDG SNGDCTG ALEV FVKREA ENGIG GVLNVVTTGVPGTSDGFRTYKRRKQ RLTSGSECKGDSKTHVEA GQLV +        G+ SC + 
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLVDL--------GMQSCLN-

Query:  ---QIYCDETLQDL
            +  DE+ +DL
Subjt:  ---QIYCDETLQDL

TrEMBL top hitse value%identityAlignment
A0A6J1DJP9 PHD finger protein EHD31.8e-3185.37Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV
        MVIED KSNGDCTG ALEV FVK EAG+NG+GMGVLNVVT GVPGTSDGFRTYKRRK T+LTSGSECKGD KTHVEA GQL+
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV

A0A6J1EE29 PHD finger protein EHD3-like6.4e-2975.56Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLVDLGMQSCL
        MVIEDG+SNG+CTGR LEV F+K  AG+NGIGMGVLNVVT GVPGTSDGFRTYKRRKQT+L  GSECKGD K HVEA  QLV   +Q  L
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLVDLGMQSCL

A0A6J1F863 PHD finger protein EHD3-like1.3e-2982.93Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV
        M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+LT GSECKG+ KTHVEA GQ V
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV

A0A6J1IEM0 PHD finger protein EHD3-like1.3e-2982.93Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV
        M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+LT GSECKG+ KTHVEA GQ V
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLV

A0A6J1IZG8 PHD finger protein EHD3-like7.8e-2773.63Show/hide
Query:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTT-GVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLVDLGMQSCL
        MVIEDG+SNG+CTGR LEV F+K  AG+NGIGMGVLNVVT  GVPGTSDGFRTYKRRKQT+L  GSEC GD K HVEA  QLV   +Q  L
Subjt:  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTT-GVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLVDLGMQSCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAACTTAAGGTTTTTCCCAGACAGGGGAAGTTGCAGATATAATTTTAGTGCCAGTGTTTTGCGAAGCTTGGGTGTGTGGATTCGACGGGAATTTTCAGAATCTAG
TAACTCATGCGACCATCGGAACCCTAATTCTATCTGGAATTTAGGGTTTTCATCGTCCGGGCAGATGGTTATAGAAGATGGGAAAAGCAATGGGGATTGCACGGGACGCG
CTTTGGAGGTCAATTTCGTGAAGAGGGAGGCAGGGGAAAACGGAATCGGAATGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAGCGATGGTTTTCGAACT
TACAAGAGGCGGAAGCAGACTAGGTTGACCTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCACGTTGAAGCTGTTGGTCAATTAGTGGATCTTGGAATGCAGAGTTG
CTTAAACCAGATTTATTGTGATGAAACCCTTCAAGATTTATGA
mRNA sequenceShow/hide mRNA sequence
GCCTGATCTATGAGGTTTGGAGTGTCCTATGTGTTTTCTACGTTTCCAAGGTCTAGGTTGTGAGTCCTATTTTTACATTAATACATCGCTTTTTTTTTAAAAAAACATTA
TTTGTAAATTGTAAGCAAACTGCAGATCCGAACCGCTTAATCGGTCTGGTCCGAAGAATAAACCGCGTCGTCGGCGCAAAACGGCTGCGAATTTCAGAATTTTTTTGAAA
AAAAGGGACCAAGATAAGACCGCTGGTTTAGCCCAAAAAAAAAAAAAGAAAAAAAAAAAAACTTCTTCTGCTGCTCTCCCGCCTCTCGGATTTTGGAGTTTCCATTTCAG
TTGCATCTTCTCTTCACCACATTTTGTTTGCTCAAGTATGCCTCCCTCTCTCGTTCCTCTTTATTCTGTTTTTTCACTTTTAAATTTCATTTCTCTTTGGTATCTGTTTG
GTTGCTGAGAAAACTGTCCTGAGAAACGGAGAAGAATGGAGTTTGTCGGATTTTGTAGTTCCATTGTTTCAGCATTTTGTTTAGCAGCTACTGGATTAGTTTGAATTAGC
TGCTTATTTGTTGAATATGTCGAACTTAAGGTTTTTCCCAGACAGGGGAAGTTGCAGATATAATTTTAGTGCCAGTGTTTTGCGAAGCTTGGGTGTGTGGATTCGACGGG
AATTTTCAGAATCTAGTAACTCATGCGACCATCGGAACCCTAATTCTATCTGGAATTTAGGGTTTTCATCGTCCGGGCAGATGGTTATAGAAGATGGGAAAAGCAATGGG
GATTGCACGGGACGCGCTTTGGAGGTCAATTTCGTGAAGAGGGAGGCAGGGGAAAACGGAATCGGAATGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAG
CGATGGTTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACCTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCACGTTGAAGCTGTTGGTCAATTAGTGGATC
TTGGAATGCAGAGTTGCTTAAACCAGATTTATTGTGATGAAACCCTTCAAGATTTATGA
Protein sequenceShow/hide protein sequence
MSNLRFFPDRGSCRYNFSASVLRSLGVWIRREFSESSNSCDHRNPNSIWNLGFSSSGQMVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRT
YKRRKQTRLTSGSECKGDSKTHVEAVGQLVDLGMQSCLNQIYCDETLQDL