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Lsi11G010050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G010050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDEAD-box ATP-dependent RNA helicase FANCM isoform X7
Genome locationchr11:16980604..16981395
RNA-Seq ExpressionLsi11G010050
SyntenyLsi11G010050
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domainsIPR039686 - FANCM/Mph1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152476.1 DEAD-box ATP-dependent RNA helicase FANCM [Momordica charantia]1.5e-3587.36Show/hide
Query:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDA
        +K+Q IQQIIDNLHISTL+YRDESDHDVSPYVHDRKIEL+QVAMGEDAVEINN+LLEVIRPFVAKLCS+G+LQNRDYRTVWYK+  A
Subjt:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDA

XP_022939325.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucurbita moschata]9.7e-5687.4Show/hide
Query:  PIEHLGITLIVLQFVSYQYDFECTVNDGTRATKNTSLNCHTRICIYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINN
        PIEHL ITLIVLQFVSY YD +C VNDGT ATKNTSLNCHTRI +YSAKKQGIQQIIDNLHIS LQYRDESDHDVSPYVHDRKIELIQVAMGEDA EINN
Subjt:  PIEHLGITLIVLQFVSYQYDFECTVNDGTRATKNTSLNCHTRICIYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINN

Query:  ELLEVIRPFVAKLCSIGILQNRDYRTV
        +LLE IRPFVAKLCS+G+LQ+RDYRT+
Subjt:  ELLEVIRPFVAKLCSIGILQNRDYRTV

XP_022939326.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X8 [Cucurbita moschata]6.1e-3489.16Show/hide
Query:  IYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV
        +YSAKKQGIQQIIDNLHIS LQYRDESDHDVSPYVHDRKIELIQVAMGEDA EINN+LLE IRPFVAKLCS+G+LQ+RDYRT+
Subjt:  IYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV

XP_022993248.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Cucurbita maxima]6.7e-3391.25Show/hide
Query:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV
        +K+QGIQQIIDNLHIS LQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINN+LLE IRPFVAKLCS+GILQNRDYRT+
Subjt:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV

XP_022993253.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucurbita maxima]9.4e-3591.57Show/hide
Query:  IYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV
        +YSAK+QGIQQIIDNLHIS LQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINN+LLE IRPFVAKLCS+GILQNRDYRT+
Subjt:  IYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV

TrEMBL top hitse value%identityAlignment
A0A0A0LMN2 Helicase ATP-binding domain-containing protein2.0e-3893.18Show/hide
Query:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDAH
        +K QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEI+N+LLEV+RPFVAKL SIGILQNRDYRTVWYKSFDAH
Subjt:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDAH

A0A6J1DHU7 DEAD-box ATP-dependent RNA helicase FANCM7.0e-3687.36Show/hide
Query:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDA
        +K+Q IQQIIDNLHISTL+YRDESDHDVSPYVHDRKIEL+QVAMGEDAVEINN+LLEVIRPFVAKLCS+G+LQNRDYRTVWYK+  A
Subjt:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDA

A0A6J1FFK2 DEAD-box ATP-dependent RNA helicase FANCM isoform X83.0e-3489.16Show/hide
Query:  IYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV
        +YSAKKQGIQQIIDNLHIS LQYRDESDHDVSPYVHDRKIELIQVAMGEDA EINN+LLE IRPFVAKLCS+G+LQ+RDYRT+
Subjt:  IYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV

A0A6J1FMD9 DEAD-box ATP-dependent RNA helicase FANCM isoform X74.7e-5687.4Show/hide
Query:  PIEHLGITLIVLQFVSYQYDFECTVNDGTRATKNTSLNCHTRICIYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINN
        PIEHL ITLIVLQFVSY YD +C VNDGT ATKNTSLNCHTRI +YSAKKQGIQQIIDNLHIS LQYRDESDHDVSPYVHDRKIELIQVAMGEDA EINN
Subjt:  PIEHLGITLIVLQFVSYQYDFECTVNDGTRATKNTSLNCHTRICIYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINN

Query:  ELLEVIRPFVAKLCSIGILQNRDYRTV
        +LLE IRPFVAKLCS+G+LQ+RDYRT+
Subjt:  ELLEVIRPFVAKLCSIGILQNRDYRTV

A0A6J1K1P1 DEAD-box ATP-dependent RNA helicase FANCM isoform X74.6e-3591.57Show/hide
Query:  IYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV
        +YSAK+QGIQQIIDNLHIS LQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINN+LLE IRPFVAKLCS+GILQNRDYRT+
Subjt:  IYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV

SwissProt top hitse value%identityAlignment
A0A1D5PRR9 Fanconi anemia group M protein5.1e-0731.51Show/hide
Query:  QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRD
        + +QQ++ NL I+ ++   E   ++ PY H+R++E I V +GE+   I    + V+  F  +L  +G+L  RD
Subjt:  QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRD

I3XHK1 DEAD-box ATP-dependent RNA helicase FANCM4.0e-2056.25Show/hide
Query:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV
        +K Q IQ IIDNL ISTL+YR+ESDHDV PYVHDRK+E+I+V +G+DA +++  L  VIRP+  +L + G+  NRD +T+
Subjt:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV

Q7SDF3 ATP-dependent DNA helicase mph11.5e-0635.62Show/hide
Query:  QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRD
        +G+Q +IDNL IS ++ R E   D+  YVH R I  I     ++ +E+ +   + ++P V KL S  I   RD
Subjt:  QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRD

Q8BGE5 Fanconi anemia group M protein homolog3.9e-0731.82Show/hide
Query:  HTRICIYSAKK----QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRD
        H RI   SA      + +QQ+I NL I  ++ R E   D+ PY H+R++E + V +GE+   I    ++++  F + L    +L  RD
Subjt:  HTRICIYSAKK----QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRD

Q8IYD8 Fanconi anemia group M protein1.1e-0631.82Show/hide
Query:  HTRICIYSAKK----QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRD
        H RI   SA      + +QQ+I NL I  ++ R E   D+  Y H+RK+E + V +GE+   I    ++++  F   L    +L  RD
Subjt:  HTRICIYSAKK----QGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRD

Arabidopsis top hitse value%identityAlignment
AT1G35530.1 DEAD/DEAH box RNA helicase family protein2.8e-2156.25Show/hide
Query:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV
        +K Q IQ IIDNL ISTL+YR+ESDHDV PYVHDRK+E+I+V +G+DA +++  L  VIRP+  +L + G+  NRD +T+
Subjt:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV

AT1G35530.2 DEAD/DEAH box RNA helicase family protein2.8e-2156.25Show/hide
Query:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV
        +K Q IQ IIDNL ISTL+YR+ESDHDV PYVHDRK+E+I+V +G+DA +++  L  VIRP+  +L + G+  NRD +T+
Subjt:  AKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIELIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTATGACAGAAAAGAGAACATGCACCCAGTGATATTTGATGACTTATGCAGAATGCTGATTGCTGCTTATCCCATCGAGCACTTGGGAATTACTCTTATTGTGTT
GCAGTTCGTGAGTTACCAGTATGATTTTGAATGTACAGTTAATGATGGTACCCGTGCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATTTGCATTTACTCAGCAA
AGAAGCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTGATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAA
TTGATTCAAGTTGCAATGGGAGAAGATGCTGTTGAGATAAATAATGAGCTCTTGGAAGTTATCCGTCCATTTGTGGCTAAACTTTGTTCAATAGGAATTCTCCAAAATAG
AGATTATAGAACGGTATGGTACAAATCTTTTGATGCGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGTATGACAGAAAAGAGAACATGCACCCAGTGATATTTGATGACTTATGCAGAATGCTGATTGCTGCTTATCCCATCGAGCACTTGGGAATTACTCTTATTGTGTT
GCAGTTCGTGAGTTACCAGTATGATTTTGAATGTACAGTTAATGATGGTACCCGTGCCACTAAGAATACTAGCCTTAACTGCCACACCAGGATTTGCATTTACTCAGCAA
AGAAGCAGGGTATTCAGCAAATCATTGACAACTTACACATTTCAACCCTTCAATATCGTGATGAAAGTGATCATGATGTCAGTCCATATGTTCATGACAGGAAAATAGAA
TTGATTCAAGTTGCAATGGGAGAAGATGCTGTTGAGATAAATAATGAGCTCTTGGAAGTTATCCGTCCATTTGTGGCTAAACTTTGTTCAATAGGAATTCTCCAAAATAG
AGATTATAGAACGGTATGGTACAAATCTTTTGATGCGCATTAG
Protein sequenceShow/hide protein sequence
MMYDRKENMHPVIFDDLCRMLIAAYPIEHLGITLIVLQFVSYQYDFECTVNDGTRATKNTSLNCHTRICIYSAKKQGIQQIIDNLHISTLQYRDESDHDVSPYVHDRKIE
LIQVAMGEDAVEINNELLEVIRPFVAKLCSIGILQNRDYRTVWYKSFDAH