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Lsi11G010260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G010260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
Genome locationchr11:17440013..17448640
RNA-Seq ExpressionLsi11G010260
SyntenyLsi11G010260
Gene Ontology termsNA
InterPro domainsIPR002885 - Pentatricopeptide repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN62097.2 hypothetical protein Csa_006310 [Cucumis sativus]9.8e-0485.19Show/hide
Query:  GYNHHGNMEQALKLFFELQNYGVKPDQ
        GY+HHGNMEQAL LFF LQN GVKPDQ
Subjt:  GYNHHGNMEQALKLFFELQNYGVKPDQ
XP_004148057.2 pentatricopeptide repeat-containing protein At3g50420 isoform X1 [Cucumis sativus]9.8e-0485.19Show/hide
Query:  GYNHHGNMEQALKLFFELQNYGVKPDQ
        GY+HHGNMEQAL LFF LQN GVKPDQ
Subjt:  GYNHHGNMEQALKLFFELQNYGVKPDQ
XP_022149486.1 pentatricopeptide repeat-containing protein At3g50420 [Momordica charantia]4.4e-0481.48Show/hide
Query:  GYNHHGNMEQALKLFFELQNYGVKPDQ
        GY+HHGN++QALKLFFELQN+GV+PDQ
Subjt:  GYNHHGNMEQALKLFFELQNYGVKPDQ
XP_031736576.1 pentatricopeptide repeat-containing protein At3g50420 isoform X2 [Cucumis sativus]5.7e-0470.59Show/hide
Query:  GYNHHGNMEQALKLFFELQNYGVKPDQGIMYGAV
        GY+HHGNMEQAL LFF LQN GVKPDQ + +  V
Subjt:  GYNHHGNMEQALKLFFELQNYGVKPDQGIMYGAV
XP_038901658.1 pentatricopeptide repeat-containing protein At3g50420 [Benincasa hispida]1.2e-0488.89Show/hide
Query:  GYNHHGNMEQALKLFFELQNYGVKPDQ
        GY+HHG MEQALKLFFELQN+GVKPDQ
Subjt:  GYNHHGNMEQALKLFFELQNYGVKPDQ
TrEMBL top hitse value%identityAlignment
A0A0A0LJT0 Uncharacterized protein4.7e-0485.19Show/hide
Query:  GYNHHGNMEQALKLFFELQNYGVKPDQ
        GY+HHGNMEQAL LFF LQN GVKPDQ
Subjt:  GYNHHGNMEQALKLFFELQNYGVKPDQ
A0A6J1D8I4 pentatricopeptide repeat-containing protein At3g504202.1e-0481.48Show/hide
Query:  GYNHHGNMEQALKLFFELQNYGVKPDQ
        GY+HHGN++QALKLFFELQN+GV+PDQ
Subjt:  GYNHHGNMEQALKLFFELQNYGVKPDQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G22150.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.2e-0430.56Show/hide
Query:  GYNHHGNMEQALKLFFELQNYGVKPD--------QGIMY-GAVDRIIKLPIIIRHVYHLTPQKPGFCLFSNI
        GY  HG  E+A+ LF  +Q  G+KPD            Y G +D  +K+   +R VY++ P    +C  +++
Subjt:  GYNHHGNMEQALKLFFELQNYGVKPD--------QGIMY-GAVDRIIKLPIIIRHVYHLTPQKPGFCLFSNI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGTTGTGGAGCTGAAATCTGTCTTTGGGAGTCTAATCGACATGTATGCCAAAAATATGGAACTGGGTACAACCACCATGGGAATATGGAACAGGCATTGAAGCT
CTTCTTCGAGCTTCAAAACTATGGTGTCAAGCCAGATCAAGGTATCATGTATGGCGCAGTGGACAGGATCATTAAACTTCCAATCATCATTCGACACGTTTACCATCTAA
CACCTCAGAAACCTGGATTCTGCCTTTTTTCCAACATTGATCAGTTGGACAAAATGATATACTTTTTCTCGAAGATTGAAGAATTGGAAGTATCTAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGGTTGTGGAGCTGAAATCTGTCTTTGGGAGTCTAATCGACATGTATGCCAAAAATATGGAACTGGGTACAACCACCATGGGAATATGGAACAGGCATTGAAGCT
CTTCTTCGAGCTTCAAAACTATGGTGTCAAGCCAGATCAAGGTATCATGTATGGCGCAGTGGACAGGATCATTAAACTTCCAATCATCATTCGACACGTTTACCATCTAA
CACCTCAGAAACCTGGATTCTGCCTTTTTTCCAACATTGATCAGTTGGACAAAATGATATACTTTTTCTCGAAGATTGAAGAATTGGAAGTATCTAAGGCATGA
Protein sequenceShow/hide protein sequence
MIGCGAEICLWESNRHVCQKYGTGYNHHGNMEQALKLFFELQNYGVKPDQGIMYGAVDRIIKLPIIIRHVYHLTPQKPGFCLFSNIDQLDKMIYFFSKIEELEVSKA