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Lsi11G010420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G010420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCytochrome b6-f complex subunit 7
Genome locationchr11:17980421..17980798
RNA-Seq ExpressionLsi11G010420
SyntenyLsi11G010420
Gene Ontology termsGO:0009512 - cytochrome b6f complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR012595 - PetM of cytochrome b6/f complex subunit 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572003.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia]2.5e-5191.94Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN
        AT SATLSP +STAAPIAAGSRRQR T+VHYITGLNSF GLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_008454894.1 PREDICTED: uncharacterized protein LOC103495201 [Cucumis melo]1.2e-5395.2Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAII
        MATASATLS AMSTAAPIAAGSRRQRQT+VHYITGLNSFGGLKAHNNVVSLGLPVCADQSFA IVSSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

XP_022972366.1 uncharacterized protein LOC111470941 [Cucurbita maxima]4.6e-5394.35Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN
        ATASATLSPA+STAAPIAAGSRRQR T+VHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_023554105.1 uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]6.6e-5292.74Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN
        ATASATLSP +STAAPIAAGSRRQR  +VHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

XP_038887487.1 uncharacterized protein LOC120077620 [Benincasa hispida]2.4e-5495.2Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAII
        MATASATLSPAM TAAPIAAGSRRQRQT+VHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANI+SSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

TrEMBL top hitse value%identityAlignment
A0A0A0K4W4 Uncharacterized protein4.6e-5190.4Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAII
        MATASATLS AMS+AAPI+AGSRRQRQT+ H+I+GLNSF GLKAHNNVVSLGLPVCADQSFA IVSSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

A0A1S3C0U4 uncharacterized protein LOC1034952015.8e-5495.2Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAII
        MATASATLS AMSTAAPIAAGSRRQRQT+VHYITGLNSFGGLKAHNNVVSLGLPVCADQSFA IVSSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAII
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAII

Query:  NGLVLVGVAVGFVLLRIEASVEEAE
        NGLVL+GVAVGFVLLRIEASVEEAE
Subjt:  NGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1C3G5 uncharacterized protein LOC1110080074.8e-4889.06Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRR-QRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKS--GGGALSSSCNAAGEIFRIA
        MATASATLSPAMSTAAPIAAGSRR QR  +VHYITGLNSFGGLKAHNNVVSLGLP+C D SFA IVSSLKYPSKGKGK+  GGGALSS+CNAAGEIFRIA
Subjt:  MATASATLSPAMSTAAPIAAGSRR-QRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKS--GGGALSSSCNAAGEIFRIA

Query:  AIINGLVLVGVAVGFVLLRIEASVEEAE
        AIINGLVLVGVAVGFVLLRIEA VEE E
Subjt:  AIINGLVLVGVAVGFVLLRIEASVEEAE

A0A6J1GND2 uncharacterized protein LOC1114555034.6e-5191.13Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN
        AT SATLSP +STAAPIAAGSRRQR T+VHYITGLNSF GLKAHNN+ SLGLPVCADQSFA+IVSSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

A0A6J1I5T0 uncharacterized protein LOC1114709412.2e-5394.35Show/hide
Query:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN
        ATASATLSPA+STAAPIAAGSRRQR T+VHYITGLNSFGGLKAHNN+ SLGLPVCADQSFANIVSSLKYPSKGKGK+GGGALSS+CNAAGEIFRIAAIIN
Subjt:  ATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIIN

Query:  GLVLVGVAVGFVLLRIEASVEEAE
        GLVLVGVAVGFVLLRIEASVEEAE
Subjt:  GLVLVGVAVGFVLLRIEASVEEAE

SwissProt top hitse value%identityAlignment
P80883 Cytochrome b6-f complex subunit 7 (Fragment)8.0e-0883.33Show/hide
Query:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE
        NAA EIFRIAA++NGL LVGVA+GFVLLRIEA+VEE
Subjt:  NAAGEIFRIAAIINGLVLVGVAVGFVLLRIEASVEE

Arabidopsis top hitse value%identityAlignment
AT2G26500.1 cytochrome b6f complex subunit (petM), putative2.1e-2758.14Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTH--VHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSSCNAAGEIFRI
        MATA+A    + + +  ++   + Q+++   V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SL      KG+ G GGALS++CNA GEIF+I
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTH--VHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSSCNAAGEIFRI

Query:  AAIINGLVLVGVAVGFVLLRIEASVEEAE
        AAI+N L LVGVAVGFVLLRIE SVEEAE
Subjt:  AAIINGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.2 cytochrome b6f complex subunit (petM), putative2.1e-2758.14Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTH--VHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSSCNAAGEIFRI
        MATA+A    + + +  ++   + Q+++   V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SL      KG+ G GGALS++CNA GEIF+I
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTH--VHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSG-GGALSSSCNAAGEIFRI

Query:  AAIINGLVLVGVAVGFVLLRIEASVEEAE
        AAI+N L LVGVAVGFVLLRIE SVEEAE
Subjt:  AAIINGLVLVGVAVGFVLLRIEASVEEAE

AT2G26500.3 cytochrome b6f complex subunit (petM), putative1.2e-1139.84Show/hide
Query:  MATASATLSPAMSTAAPIAAGSRRQRQTH--VHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIA
        MATA+A    + + +  ++   + Q+++   V YITGLNS+GGLKA NN VVS+G P+C +Q FAN+V SLK                            
Subjt:  MATASATLSPAMSTAAPIAAGSRRQRQTH--VHYITGLNSFGGLKAHNN-VVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIA

Query:  AIINGLVLVGVAVGFVLLRIEASVEEAE
                 G  VGFVLLRIE SVEEAE
Subjt:  AIINGLVLVGVAVGFVLLRIEASVEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACAGCCTCCGCTACCCTCTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGCTCAAGGCGGCAGAGGCAAACCCATGTCCATTACATAACTGGGCTTAA
CTCATTTGGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAACATTGTGAGCTCTTTGAAATACCCATCAAAGG
GAAAAGGCAAAAGCGGCGGTGGGGCTCTTTCTTCCAGTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTG
GGGTTTGTTCTTCTTCGGATTGAAGCATCTGTTGAGGAGGCAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACAGCCTCCGCTACCCTCTCGCCGGCCATGTCCACCGCCGCCCCCATCGCCGCCGGCTCAAGGCGGCAGAGGCAAACCCATGTCCATTACATAACTGGGCTTAA
CTCATTTGGTGGCTTGAAAGCTCACAACAATGTCGTCTCCTTGGGCCTTCCCGTTTGTGCTGATCAATCATTTGCAAACATTGTGAGCTCTTTGAAATACCCATCAAAGG
GAAAAGGCAAAAGCGGCGGTGGGGCTCTTTCTTCCAGTTGTAATGCCGCCGGTGAGATTTTCAGGATTGCTGCCATTATCAATGGGCTTGTTCTTGTTGGAGTGGCTGTG
GGGTTTGTTCTTCTTCGGATTGAAGCATCTGTTGAGGAGGCAGAGTGA
Protein sequenceShow/hide protein sequence
MATASATLSPAMSTAAPIAAGSRRQRQTHVHYITGLNSFGGLKAHNNVVSLGLPVCADQSFANIVSSLKYPSKGKGKSGGGALSSSCNAAGEIFRIAAIINGLVLVGVAV
GFVLLRIEASVEEAE