CuGenDBv2

Gene ID	Lsi11G010470
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	diphthamide biosynthesis protein 3-like
Genome location	chr11:17994901..17995158
RNA-Seq Expression	Lsi11G010470
Synteny	Lsi11G010470
Gene Ontology terms	GO:0002098 - tRNA wobble uridine modification (biological process) GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007872 - DPH-type metal-binding domain IPR036671 - DPH-type metal-binding domain superfamily IPR044248 - Diphthamide biosynthesis protein 3/4-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004137002.1 diphthamide biosynthesis protein 3 [Cucumis sativus]

1.0e-40

95.29

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL  SNQKNNKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

XP_008454889.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]

1.6e-41

96.47

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DSNQKNNKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

XP_022136247.1 diphthamide biosynthesis protein 3-like [Momordica charantia]

4.7e-41

92.94

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDS+QKNNKG++PSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

XP_022972367.1 diphthamide biosynthesis protein 3-like [Cucurbita maxima]

9.4e-42

96.47

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS+ KNNKGL+PSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

XP_038887330.1 diphthamide biosynthesis protein 3-like [Benincasa hispida]

2.9e-43

100

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4W9 DPH-type MB domain-containing protein

5.0e-41

95.29

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL  SNQKNNKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

A0A1S3BZL5 diphthamide biosynthesis protein 3-like

7.8e-42

96.47

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DSNQKNNKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

A0A5A7SJN1 Diphthamide biosynthesis protein 3-like

7.8e-42

96.47

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DSNQKNNKGLEPSKQ PIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

A0A6J1C519 diphthamide biosynthesis protein 3-like

2.3e-41

92.94

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDS+QKNNKG++PSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

A0A6J1I4L9 diphthamide biosynthesis protein 3-like

4.6e-42

96.47

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS+ KNNKGL+PSKQQPIVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

SwissProt top hits

e value

%identity

Alignment

Q21102 DPH3 homolog

1.7e-17

59.02

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Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q4R312 DPH3 homolog

3.7e-17

57.38

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Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q6VUC1 DPH3 homolog

2.9e-17

57.38

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Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q96FX2 DPH3 homolog

3.7e-17

57.38

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Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q9VGQ9 DPH3 homolog

1.7e-17

55.88

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Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKN
        +D+VEIED E++EE + + YPCPCGD FQI+KE+L  GEE+A CPSCSL I VIY+ E F  + ++++
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKN

Arabidopsis top hits

e value

%identity

Alignment

AT2G15910.1 CSL zinc finger domain-containing protein

3.5e-34

79.27

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPI
        MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF  D+ +KNN   EP  + P+
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPI

AT2G15910.2 CSL zinc finger domain-containing protein

2.4e-35

78.82

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Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA
        MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF  D+ +KNN   EP  + P+ VA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

Sequences

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CDS sequence

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ATGTCATACGACGACGTGGAGATTGAAGACATGGAGTGGAACGAGGAACTGCAGGCCTTCACGTACCCTTGCCCCTGCGGCGACTTATTCCAGATCACCAAGGAGGATCT
TAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACAGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTAATCAGAAGAATAACAAAGGAC
TTGAGCCCTCTAAACAGCAGCCTATCGTCGTCGCTTAA

mRNA sequence

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Protein sequence

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MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSNQKNNKGLEPSKQQPIVVA

Lsi11G010470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome