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Lsi11G010620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G010620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationchr11:18452240..18462615
RNA-Seq ExpressionLsi11G010620
SyntenyLsi11G010620
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011262 - DNA-directed RNA polymerase, insert domain
IPR011773 - DNA-directed RNA polymerase, alpha subunit
IPR036643 - DNA-directed RNA polymerase, insert domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88931.1 RNA polymerase alpha subunit, partial [Lagenaria siceraria]5.3e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

AHM90997.1 RNA polymerase alpha subunit [Lagenaria siceraria]5.3e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

YP_009326021.1 RNA polymerase alpha subunit [Citrullus lanatus]5.3e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

YP_009456178.1 RNA polymerase alpha subunit [Lagenaria siceraria]5.3e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

YP_009752867.1 RNA polymerase subunit alpha [Baijiania yunnanensis]5.3e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

TrEMBL top hitse value%identityAlignment
A0A1P8LEA2 DNA-directed RNA polymerase subunit alpha2.5e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

A0A2Z2CGI9 DNA-directed RNA polymerase subunit alpha2.5e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

A0A6H0ETS7 DNA-directed RNA polymerase subunit alpha2.5e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

A0A6M3RU20 DNA-directed RNA polymerase subunit alpha2.5e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

X2F3V9 DNA-directed RNA polymerase subunit alpha2.5e-3497.4Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

SwissProt top hitse value%identityAlignment
Q09WY5 DNA-directed RNA polymerase subunit alpha7.9e-3390.79Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
        K+IVLRSNLYGTRDASICVKGP  VTAQDIILPPSVEIVDNTQHIANLTEPI LCIEL+IERNRGYRI+TPNNFQ+
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD

Q2PMQ3 DNA-directed RNA polymerase subunit alpha1.1e-3188.16Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
        K+IVLRSNLYGTRDASIC KGP  VTAQDIILPPSVEIVDNTQHIAN+TEP+NLCIELKIERNRGYRI+T  NFQD
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD

Q49KW6 DNA-directed RNA polymerase subunit alpha4.3e-3186.84Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
        K+IVLRSNLYGTR+ASICVKGP CVTAQDIILP SVEIVDNTQ+IANLTEPINLCI L+IERNRGY I+TP NFQD
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD

Q4VZK3 DNA-directed RNA polymerase subunit alpha1.3e-3594.81Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA
        K+IVLRSNLYGTRDASICVKGP CVTAQDIILPPSVEIVDNTQHIANL EPINLCIELKIERNRGY IQTPNNFQDA
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA

Q7YJU6 DNA-directed RNA polymerase subunit alpha4.8e-3081.58Show/hide
Query:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
        K+IVL+SNLYGTRDASICV+GP+ VTAQDII PPSVEIVD TQHIA+LTEPINLCIEL+IER+RGYR++ PNN+QD
Subjt:  KKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD

Arabidopsis top hitse value%identityAlignment
AT5G18240.1 myb-related protein 11.2e-0765.12Show/hide
Query:  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK
        LH+RFVEAV+      +ATPK++M VMGI GL+LYHLKSHL+K
Subjt:  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK

AT5G18240.2 myb-related protein 11.2e-0765.12Show/hide
Query:  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK
        LH+RFVEAV+      +ATPK++M VMGI GL+LYHLKSHL+K
Subjt:  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK

AT5G18240.3 myb-related protein 11.2e-0765.12Show/hide
Query:  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK
        LH+RFVEAV+      +ATPK++M VMGI GL+LYHLKSHL+K
Subjt:  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK

AT5G18240.4 myb-related protein 11.2e-0765.12Show/hide
Query:  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK
        LH+RFVEAV+      +ATPK++M VMGI GL+LYHLKSHL+K
Subjt:  LHQRFVEAVDL-----EATPKSLMIVMGINGLSLYHLKSHLEK

ATCG00740.1 RNA polymerase subunit alpha3.5e-2876Show/hide
Query:  KIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
        +IVLRSNLYGTR+A ICV+GP  +TA+DIILPP+VEI+DNTQHIA LTEPI+LCIELKIERNRGY ++  NNF+D
Subjt:  KIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCCCTTAAGCTTCATCAAAGATTTGTTGAAGCTGTCGACCTTGAGGCCACACCTAAGAGCTTGATGATAGTGATGGGAATCAATGGCCTTAGTCTTTACCATCT
CAAGAGCCATTTAGAGAAGGTCAATTCCGAGAGCATATTTTATGAATTGGATGAAATAGATGGCACAAGTGATACCATCATAAAGTTGTTCTACCGAGATCAAGACCTCA
AGACCCTTCTTCACATTGACTCCATCAAAACATTTTTCTTGTGCTACACAGGTTTGAAGCTCTTAAACCCTTGTTGTTCTCAACATCTCTTTTTGTTGCTTGTTCTCTTT
CAGATTTTTCCTAGCTTCATTGTTGAGAGAAGGCTATCGGTTATTGCTGTTGAAACTGATTTAAATCTCATGCACAAGGTAAAGCGTCAGCATGATAGTCTCAAGGGTTT
CATTGTGTTTCAGAATGTGAGGGTGATTTCTATGATTTACCTTATCAGCTTCGAAATTAGAATCACAATCAATCAGGTAGGATTGACCATTTTGAGGCCAGAGGCCATGA
ATAGTGAATTTCGTTGGTACATTATCGACATCGCATGGTTGTATTTTACAAAGGGCCTCCGGCCATTGTTGAACAAAAAAGAAGTGGGTAAAAACCTGGCCTTGAACTCG
AATAAGAATGAGAAGAAGGATGGTGAAGAGAAGAAAATTGTATTGAGAAGTAATTTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTAGATGCGTAACTGC
TCAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGATAATACACAGCATATAGCTAACCTGACGGAGCCAATTAATTTGTGTATTGAATTAAAAATCGAGAGGAATC
GCGGATATCGTATACAAACGCCAAATAATTTTCAAGACGCA
mRNA sequenceShow/hide mRNA sequence
TGAGGCATATGGTTGAACAAAAAGAGGTGAAATTTTGCATTTTTTTAATACCAAATCCCCCTTGAGCTTCTACCTTCCTTCTCACCAATTACGCTTAGAGTTTTTCTTGC
TTCATTTTTCACTTCCGAGCTTTGGCATGCATTCTAGCAGGAACAATAAACTCCAAAATGGGATAAAGAACATGGTTTGTCTTGATGAAAAGCCAAGGCTGGAATGGACT
CCCTTAAGCTTCATCAAAGATTTGTTGAAGCTGTCGACCTTGAGGCCACACCTAAGAGCTTGATGATAGTGATGGGAATCAATGGCCTTAGTCTTTACCATCTCAAGAGC
CATTTAGAGAAGGTCAATTCCGAGAGCATATTTTATGAATTGGATGAAATAGATGGCACAAGTGATACCATCATAAAGTTGTTCTACCGAGATCAAGACCTCAAGACCCT
TCTTCACATTGACTCCATCAAAACATTTTTCTTGTGCTACACAGGTTTGAAGCTCTTAAACCCTTGTTGTTCTCAACATCTCTTTTTGTTGCTTGTTCTCTTTCAGATTT
TTCCTAGCTTCATTGTTGAGAGAAGGCTATCGGTTATTGCTGTTGAAACTGATTTAAATCTCATGCACAAGGTAAAGCGTCAGCATGATAGTCTCAAGGGTTTCATTGTG
TTTCAGAATGTGAGGGTGATTTCTATGATTTACCTTATCAGCTTCGAAATTAGAATCACAATCAATCAGGTAGGATTGACCATTTTGAGGCCAGAGGCCATGAATAGTGA
ATTTCGTTGGTACATTATCGACATCGCATGGTTGTATTTTACAAAGGGCCTCCGGCCATTGTTGAACAAAAAAGAAGTGGGTAAAAACCTGGCCTTGAACTCGAATAAGA
ATGAGAAGAAGGATGGTGAAGAGAAGAAAATTGTATTGAGAAGTAATTTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTAGATGCGTAACTGCTCAAGAC
ATCATCTTACCACCTTCGGTAGAAATCGTTGATAATACACAGCATATAGCTAACCTGACGGAGCCAATTAATTTGTGTATTGAATTAAAAATCGAGAGGAATCGCGGATA
TCGTATACAAACGCCAAATAATTTTCAAGACGCA
Protein sequenceShow/hide protein sequence
MDSLKLHQRFVEAVDLEATPKSLMIVMGINGLSLYHLKSHLEKVNSESIFYELDEIDGTSDTIIKLFYRDQDLKTLLHIDSIKTFFLCYTGLKLLNPCCSQHLFLLLVLF
QIFPSFIVERRLSVIAVETDLNLMHKVKRQHDSLKGFIVFQNVRVISMIYLISFEIRITINQVGLTILRPEAMNSEFRWYIIDIAWLYFTKGLRPLLNKKEVGKNLALNS
NKNEKKDGEEKKIVLRSNLYGTRDASICVKGPRCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDA