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Lsi11G011020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G011020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Genome locationchr11:19169653..19171606
RNA-Seq ExpressionLsi11G011020
SyntenyLsi11G011020
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022286.1 hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-2886.05Show/hide
Query:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MASVCRS+LTA GSR MA RTRTL  KTLNPM  SSSSKG  SV RIVSSLATVESLMPLHSAVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

XP_008447032.1 PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucumis melo]1.4e-2785.06Show/hide
Query:  MASVCRSLLT-AAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MASV RSLLT AA SRSMA RTR LAHKTLNP+LVSSSS+ FPS+ RIVSSLA VESLMPLH+AVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLT-AAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

XP_022136047.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]3.6e-2887.36Show/hide
Query:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLV-SSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MA+VCRSLLTAAGSRS+A RTRTL  KTLNPM V SSSS+G PSV RIVSSLATVESLMPLHSAVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLV-SSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

XP_023531748.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]2.1e-2887.21Show/hide
Query:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MASVCRS+LTA GSRSMA RTRTL  KTLNPM  SSSSKG  SV RIVSSLATVESLMPLHSAVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

XP_038887804.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida]4.5e-3190.7Show/hide
Query:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MASVCRSLLTAA SRSMA RTRTLAHKTLNP+LVSSSS+GF SV RIVSSLATVESLMPLHSAVASARLKSKIAV SHCW WLSEG
Subjt:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

TrEMBL top hitse value%identityAlignment
A0A1S3BGG1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like6.6e-2885.06Show/hide
Query:  MASVCRSLLT-AAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MASV RSLLT AA SRSMA RTR LAHKTLNP+LVSSSS+ FPS+ RIVSSLA VESLMPLH+AVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLT-AAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

A0A5D3BYV0 Protein NUCLEAR FUSION DEFECTIVE 66.6e-2885.06Show/hide
Query:  MASVCRSLLT-AAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MASV RSLLT AA SRSMA RTR LAHKTLNP+LVSSSS+ FPS+ RIVSSLA VESLMPLH+AVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLT-AAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

A0A6J1C4G8 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial1.7e-2887.36Show/hide
Query:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLV-SSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MA+VCRSLLTAAGSRS+A RTRTL  KTLNPM V SSSS+G PSV RIVSSLATVESLMPLHSAVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLV-SSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

A0A6J1F5F6 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like1.6e-2681.4Show/hide
Query:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MASVCRS+LTA G+R +  RTRTL  KTLNPM  SSSS+G  SV RIVSSLATVESLMPLHSAVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

A0A6J1GKU0 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like2.1e-2680.9Show/hide
Query:  MASVCRSLLTAA---GSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MAS+CRSLL AA   GSRSMA RTRTLAH TL P+ VSSSS+GF SV RI SSLA+V+SLMPLHSAVASARLKSKIAV SHCWSWLSEG
Subjt:  MASVCRSLLTAA---GSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

SwissProt top hitse value%identityAlignment
Q93ZJ3 Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial2.2e-0437.08Show/hide
Query:  SVCRSLLTAAGSRSMASRTRTLAHKTLN-PMLVSSSSKGFPSVFRI---VSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEGC
        S  RS+L AA SRS A+ T   A +  + P L  ++++  P +  +   V     VESL+P HSA ASA + SK+++    + WLS+ C
Subjt:  SVCRSLLTAAGSRSMASRTRTLAHKTLN-PMLVSSSSKGFPSVFRI---VSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEGC

Arabidopsis top hitse value%identityAlignment
AT2G20585.1 nuclear fusion defective 61.6e-0537.08Show/hide
Query:  SVCRSLLTAAGSRSMASRTRTLAHKTLN-PMLVSSSSKGFPSVFRI---VSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEGC
        S  RS+L AA SRS A+ T   A +  + P L  ++++  P +  +   V     VESL+P HSA ASA + SK+++    + WLS+ C
Subjt:  SVCRSLLTAAGSRSMASRTRTLAHKTLN-PMLVSSSSKGFPSVFRI---VSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEGC

AT2G20585.2 nuclear fusion defective 61.6e-0537.08Show/hide
Query:  SVCRSLLTAAGSRSMASRTRTLAHKTLN-PMLVSSSSKGFPSVFRI---VSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEGC
        S  RS+L AA SRS A+ T   A +  + P L  ++++  P +  +   V     VESL+P HSA ASA + SK+++    + WLS+ C
Subjt:  SVCRSLLTAAGSRSMASRTRTLAHKTLN-PMLVSSSSKGFPSVFRI---VSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEGC

AT2G20585.3 nuclear fusion defective 62.7e-0537.5Show/hide
Query:  SVCRSLLTAAGSRSMASRTRTLAHKTLN-PMLVSSSSKGFPSVFRI---VSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        S  RS+L AA SRS A+ T   A +  + P L  ++++  P +  +   V     VESL+P HSA ASA + SK+++    + WLS+G
Subjt:  SVCRSLLTAAGSRSMASRTRTLAHKTLN-PMLVSSSSKGFPSVFRI---VSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

AT4G39300.1 unknown protein2.2e-1553.26Show/hide
Query:  MASVCRSLLTAAGSRSMASRTRTLAHKTLN--PMLVS----SSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG
        MAS CRS L  AGSR++ SR+RT+  K+LN  P   S    S S+  P   R++S+L +VE+++PLHSAVASARL+S IA  S CWS LS+G
Subjt:  MASVCRSLLTAAGSRSMASRTRTLAHKTLN--PMLVS----SSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEG

AT4G39300.2 unknown protein1.1e-1452.75Show/hide
Query:  MASVCRSLLTAAGSRSMASRTRTLAHKTLN--PMLVS----SSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSE
        MAS CRS L  AGSR++ SR+RT+  K+LN  P   S    S S+  P   R++S+L +VE+++PLHSAVASARL+S IA  S CWS LS+
Subjt:  MASVCRSLLTAAGSRSMASRTRTLAHKTLN--PMLVS----SSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTTTGCCGATCACTTCTAACGGCGGCGGGTTCGAGGTCCATGGCCAGCCGTACCAGAACACTGGCTCATAAAACCCTAAATCCAATGCTTGTTTCTTCTTC
CTCCAAAGGCTTCCCTTCCGTTTTTAGGATAGTTTCGTCTTTGGCTACTGTGGAGTCACTGATGCCACTCCACAGTGCCGTCGCCTCAGCTCGGCTGAAGTCCAAAATTG
CCGTCGGCTCACATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTTATTCTCCATTTCTTTATTTACGTTGTTTTTATGAATGATTTGCAACACCTTTGTGACACAACAGTT
GGTGAAGATGAACTGTAA
mRNA sequenceShow/hide mRNA sequence
TATAAAGCCAGTTGCTAAACCCGCCTCCAGCGGTGTGTCTTAGAAATGGCTTCCGTTTGCCGATCACTTCTAACGGCGGCGGGTTCGAGGTCCATGGCCAGCCGTACCAG
AACACTGGCTCATAAAACCCTAAATCCAATGCTTGTTTCTTCTTCCTCCAAAGGCTTCCCTTCCGTTTTTAGGATAGTTTCGTCTTTGGCTACTGTGGAGTCACTGATGC
CACTCCACAGTGCCGTCGCCTCAGCTCGGCTGAAGTCCAAAATTGCCGTCGGCTCACATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTTATTCTCCATTTCTTTATTTAC
GTTGTTTTTATGAATGATTTGCAACACCTTTGTGACACAACAGTTGGTGAAGATGAACTGTAATTGATAATAGAGCTGAATGACAGTTAGCTGAAACGACATAGGACTTG
CGAGGTTTTTCATCTTTCCTACTTATCTTTGTAAGATACCTTTATCACAAGGAAGAATTATTTAGACAACTTTTCTCGAGTTTTGATCATTGTATAATGCAATGCGGCCA
CATTTTCTGGATATGCAGAGAGCTATTGTTTTAAGCCTCTGAACACAAACCTTGAGAGGTTAGATTTTTGTTAGGCATCTCTCTGCTGCTCTTGACTTTGTTCAATAACA
TGCAATTGATTTCCTATATTCTCTAAATATGGGGTCTTGAGCTGATTTCCAATACTTTTAAAACGTTGTGCTGAATTGAAACTTCAGAATTTTGTTGTAACCGGTTAGAT
TGTCGTTTTTCAGGCATTAGTGATCCTTAAAGCTGGTTAGATC
Protein sequenceShow/hide protein sequence
MASVCRSLLTAAGSRSMASRTRTLAHKTLNPMLVSSSSKGFPSVFRIVSSLATVESLMPLHSAVASARLKSKIAVGSHCWSWLSEGCFILHFFIYVVFMNDLQHLCDTTV
GEDEL