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Lsi11G011060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G011060
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RADIALIS-like 1
Genome locationchr11:19259665..19259931
RNA-Seq ExpressionLsi11G011060
SyntenyLsi11G011060
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3184.09Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRGNL
        M SMSS GS NAWT MQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPY +SSD LPR+RG L
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRGNL

XP_008447294.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]4.5e-3184.09Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQRG
        M SMSSHGS NAWT MQNKTFE+ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPYP  SS D LPR+RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQRG

XP_011659078.1 protein RADIALIS-like 2 [Cucumis sativus]4.5e-3184.09Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQRG
        M SMSSHGS NAWT MQNKTFE ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPYP  SS+D LPR+RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQRG

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]3.5e-3184.88Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG
        M SMSS GS NAWT MQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPY +SSD LPR+RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]6.8e-3590.7Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG
        M SMSSHGS NAWTAMQNKTFE+ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLLL+DVK IESGNVPFPYPSSSD LPR+RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG

TrEMBL top hitse value%identityAlignment
A0A1S3BHZ4 protein RADIALIS-like 22.2e-3184.09Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQRG
        M SMSSHGS NAWT MQNKTFE+ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPYP  SS D LPR+RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQRG

A0A5D3D8F6 Protein RADIALIS-like 22.2e-3184.09Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQRG
        M SMSSHGS NAWT MQNKTFE+ALA YDQDTPERW+NVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPYP  SS D LPR+RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYP--SSSDHLPRQRG

A0A6J1C6U4 protein RADIALIS-like 13.9e-2879.31Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSS-DHLPRQRG
        M SMSS GS +AWTAMQNK FE ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLL+EDVK IESG+VPFPY +S+ D  P +RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSS-DHLPRQRG

A0A6J1GK35 protein RADIALIS-like 11.7e-3184.88Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG
        M SMSS GS NAWT MQNK FE+ALAVYDQDTPERWLNVAKAVGEKTEEEVK HYQLLL DVK IESGNVPFPY +SSD LPR+RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG

A0A6J1I517 protein RADIALIS-like 14.9e-3183.72Show/hide
Query:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG
        M SMSS GS NAWT MQNK FE+ALAVYDQDTPERWLNVAK VGEKTEEEVK HYQLLL DVK IESGNVPFPY +SSD LPR+RG
Subjt:  MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.3e-2066.67Show/hide
Query:  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +SMSS  S+ +WTA QNK FE+ALA YDQDTP RW NVAK VG KT EEVK HY+LL++D+  IE+G+VPFP
Subjt:  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

Q1A173 Protein RADIALIS-like 62.1e-1865.22Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +S  S + WT  QNK FERALAVYD+DTP+RW NVAKAVG KT EEVK HY +L+ED+  IE+G VP P
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

Q58FS3 Transcription factor RADIALIS1.3e-2065.22Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        S+ GS   W+A +NK FERALAVYD+DTP+RW NVA+AV  +T EEVK HY++L+ED+K IESG VPFP
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

Q8GW75 Protein RADIALIS-like 53.2e-1957.32Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG
        SS  S+++WT+ QNK FERALAVYD+DTP+RW NVAKAVG K+ EEVK HY +L+ED+  IE   VP P   + D   + RG
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG

Q9SIJ5 Protein RADIALIS-like 21.7e-2060.71Show/hide
Query:  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP-YPSSSDHLPRQR
        SMSS+GS  +WT  QNK FERALAVYDQDTP+RW NVA+AVG KT EE K  Y LL+ D++ IE+G+VPFP Y +++ +  R R
Subjt:  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP-YPSSSDHLPRQR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.3e-2057.32Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG
        SS  S+++WT+ QNK FERALAVYD+DTP+RW NVAKAVG K+ EEVK HY +L+ED+  IE   VP P   + D   + RG
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRG

AT1G75250.1 RAD-like 61.5e-1965.22Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +S  S + WT  QNK FERALAVYD+DTP+RW NVAKAVG KT EEVK HY +L+ED+  IE+G VP P
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

AT1G75250.2 RAD-like 61.5e-1965.22Show/hide
Query:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +S  S + WT  QNK FERALAVYD+DTP+RW NVAKAVG KT EEVK HY +L+ED+  IE+G VP P
Subjt:  SSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP

AT2G21650.1 Homeodomain-like superfamily protein1.2e-2160.71Show/hide
Query:  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP-YPSSSDHLPRQR
        SMSS+GS  +WT  QNK FERALAVYDQDTP+RW NVA+AVG KT EE K  Y LL+ D++ IE+G+VPFP Y +++ +  R R
Subjt:  SMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP-YPSSSDHLPRQR

AT4G39250.1 RAD-like 19.1e-2266.67Show/hide
Query:  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP
        +SMSS  S+ +WTA QNK FE+ALA YDQDTP RW NVAK VG KT EEVK HY+LL++D+  IE+G+VPFP
Subjt:  TSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCAATGTCCTCTCATGGGTCAAATAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAGGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCT
GAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGTGGCATTACCAACTTCTTCTTGAAGATGTCAAATGTATTGAGTCTGGCAATGTCCCTTTTCCCT
ATCCATCCTCTAGTGATCATTTGCCAAGGCAAAGAGGTAATTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCAATGTCCTCTCATGGGTCAAATAATGCATGGACTGCAATGCAAAACAAGACATTTGAAAGGGCTTTGGCAGTGTATGATCAAGACACTCCTGAAAGATGGCT
GAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGTGGCATTACCAACTTCTTCTTGAAGATGTCAAATGTATTGAGTCTGGCAATGTCCCTTTTCCCT
ATCCATCCTCTAGTGATCATTTGCCAAGGCAAAGAGGTAATTTATAA
Protein sequenceShow/hide protein sequence
MTSMSSHGSNNAWTAMQNKTFERALAVYDQDTPERWLNVAKAVGEKTEEEVKWHYQLLLEDVKCIESGNVPFPYPSSSDHLPRQRGNL