; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G011070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G011070
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RADIALIS-like 1
Genome locationchr11:19275905..19276144
RNA-Seq ExpressionLsi11G011070
SyntenyLsi11G011070
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]9.4e-2879.22Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRLSR
        + HGS+ WTA+ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV +IE+G+I FPYR+STR SR
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRLSR

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]1.6e-2783.33Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSS
        ++HGSSAWTA +NKAFEKALAVYD+DTPERWLNVAKA+GGKT EEVKRHY+LLVEDVK+IESG++SFPYR+S
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSS

XP_022136072.1 protein RADIALIS-like 1 [Momordica charantia]3.0e-2682.43Show/hide
Query:  MSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSS
        MSA     AW+AM+NKAFE+ALAVYDEDTP+RWLNVA AIGGKTEEEVKRHYQLLVEDVK+IESGE+ FPYRSS
Subjt:  MSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSS

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]2.2e-2986.67Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRL
        + HGSSAWTA ENKAFEKALAV+D+DTPERW+NVAKAIGGKTE+EVKRHYQLLV+DVK+IESGEI+FPYRSSTRL
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRL

XP_022972544.1 protein RADIALIS-like 1 [Cucurbita maxima]6.5e-2985.33Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRL
        + HGSSAWTA ENKAFEKALAV+D+DTP+RW+NVAKAIGGKTE+EVKRHYQLLV DVK+IESGEI+FPYRSSTRL
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRL

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein1.4e-2984.42Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRLSR
        + HGSSAWTA+ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLL+EDV +IESG+I FPYR STR SR
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRLSR

A0A1S3BGF0 protein RADIALIS-like 14.5e-2879.22Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRLSR
        + HGS+ WTA+ENKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+EDV +IE+G+I FPYR+STR SR
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRLSR

A0A6J1C385 protein RADIALIS-like 17.8e-2883.33Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSS
        ++HGSSAWTA +NKAFEKALAVYD+DTPERWLNVAKA+GGKT EEVKRHY+LLVEDVK+IESG++SFPYR+S
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSS

A0A6J1GKV1 protein RADIALIS-like 11.1e-2986.67Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRL
        + HGSSAWTA ENKAFEKALAV+D+DTPERW+NVAKAIGGKTE+EVKRHYQLLV+DVK+IESGEI+FPYRSSTRL
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRL

A0A6J1I8Y0 protein RADIALIS-like 13.1e-2985.33Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRL
        + HGSSAWTA ENKAFEKALAV+D+DTP+RW+NVAKAIGGKTE+EVKRHYQLLV DVK+IESGEI+FPYRSSTRL
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.0e-2163.01Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSS
        ++  S +WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G + FP YR+S
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSS

Q1A173 Protein RADIALIS-like 61.4e-1866.67Show/hide
Query:  SAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP
        S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+  IE+G +  P
Subjt:  SAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP

Q58FS3 Transcription factor RADIALIS2.1e-2264.47Show/hide
Query:  MSATHGSS-AWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSS
        M++T GS   W+A ENKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++LVED+KYIESG++ FP YR++
Subjt:  MSATHGSS-AWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSS

Q6NNN0 Protein RADIALIS-like 31.4e-1862.32Show/hide
Query:  SSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSS
        S++WT  ENK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV+RHY+LL+ DV  IESG    P YRS+
Subjt:  SSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSS

Q9SIJ5 Protein RADIALIS-like 21.5e-2059.46Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSST
        +++GS +WT  +NKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G + FP Y+++T
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSST

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.5e-1959.42Show/hide
Query:  SATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP
        S+   SS+WT+ +NK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVED+  IE   +  P
Subjt:  SATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP

AT1G75250.1 RAD-like 61.0e-1966.67Show/hide
Query:  SAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP
        S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+  IE+G +  P
Subjt:  SAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP

AT1G75250.2 RAD-like 61.0e-1966.67Show/hide
Query:  SAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP
        S WT  +NK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+  IE+G +  P
Subjt:  SAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP

AT2G21650.1 Homeodomain-like superfamily protein1.1e-2159.46Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSST
        +++GS +WT  +NKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE KR Y LLV D++ IE+G + FP Y+++T
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSST

AT4G39250.1 RAD-like 12.8e-2263.01Show/hide
Query:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSS
        ++  S +WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LLV+D+  IE+G + FP YR+S
Subjt:  ATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFP-YRSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCTACTCATGGCTCTAGTGCATGGACTGCAATGGAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATGAAGACACACCTGAGAGATGGCTCAATGTTGC
TAAAGCCATTGGTGGAAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTTGAAGATGTCAAGTATATTGAATCTGGTGAAATTTCGTTTCCCTATCGAAGCT
CTACGAGATTGAGTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCTACTCATGGCTCTAGTGCATGGACTGCAATGGAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATGAAGACACACCTGAGAGATGGCTCAATGTTGC
TAAAGCCATTGGTGGAAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTTGAAGATGTCAAGTATATTGAATCTGGTGAAATTTCGTTTCCCTATCGAAGCT
CTACGAGATTGAGTCGTTGA
Protein sequenceShow/hide protein sequence
MSATHGSSAWTAMENKAFEKALAVYDEDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKYIESGEISFPYRSSTRLSR