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Lsi11G011090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G011090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RADIALIS-like 1
Genome locationchr11:19332848..19334863
RNA-Seq ExpressionLsi11G011090
SyntenyLsi11G011090
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.5e-2791.55Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]7.3e-2790.14Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]7.3e-2790.14Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.5e-2791.55Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

XP_038888369.1 protein RADIALIS-like 1 [Benincasa hispida]7.3e-2790.14Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGSG+WTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HYALLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein3.6e-2790.14Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGSGTWT  QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

A0A1S3BFW6 protein RADIALIS-like 17.2e-2891.55Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

A0A5A7SYK4 Protein RADIALIS-like 17.2e-2891.55Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGSGTWT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

A0A6J1C385 protein RADIALIS-like 13.9e-2687.32Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGS  WTAKQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVEDVKFIE   + F
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

A0A6J1GJE9 protein RADIALIS-like 13.7e-2484.72Show/hide
Query:  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        MASMSSHGS GTWT KQNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVEDVKFIE   + F
Subjt:  MASMSSHGS-GTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.3e-2271.43Show/hide
Query:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE  ++ F
Subjt:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

Q58FS3 Transcription factor RADIALIS1.5e-1966.18Show/hide
Query:  SSHGSG-TWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        S+ GSG  W+AK+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+IE   + F
Subjt:  SSHGSG-TWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

Q6NNN0 Protein RADIALIS-like 33.4e-1969.23Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE
        MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ DV  IE
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE

Q8GW75 Protein RADIALIS-like 56.9e-2072.31Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE
        MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE

Q9SIJ5 Protein RADIALIS-like 25.7e-2272.46Show/hide
Query:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE  ++ F
Subjt:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.9e-2172.31Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE
        MAS S   S +WT+KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED+  IE
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE

AT1G75250.1 RAD-like 62.1e-1970.77Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE

AT1G75250.2 RAD-like 62.1e-1970.77Show/hide
Query:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE
        MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED+  IE
Subjt:  MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIE

AT2G21650.1 Homeodomain-like superfamily protein4.0e-2372.46Show/hide
Query:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        SMSS+GSG+WT KQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++ IE  ++ F
Subjt:  SMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF

AT4G39250.1 RAD-like 12.4e-2371.43Show/hide
Query:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF
        +SMSS  SG+WTAKQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+  IE  ++ F
Subjt:  ASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTATGTCTTCCCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAA
TGTTGCAAAAGCTGTTGGTGGAAAAACAGCTGAGGAAGTCAAAAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGATGAGGAACTTGAAGTTCTACCATT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTATGTCTTCCCATGGATCTGGTACATGGACTGCAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGACCGATGGCTCAA
TGTTGCAAAAGCTGTTGGTGGAAAAACAGCTGAGGAAGTCAAAAGGCATTATGCACTTCTTGTTGAGGATGTTAAGTTTATTGAGATGAGGAACTTGAAGTTCTACCATT
GA
Protein sequenceShow/hide protein sequence
MASMSSHGSGTWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIEMRNLKFYH