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Lsi11G011110 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G011110
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein RADIALIS-like 3
Genome locationchr11:19366872..19367159
RNA-Seq ExpressionLsi11G011110
SyntenyLsi11G011110
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055424.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa]5.8e-4090.32Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMM
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSA+EV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRLVKMM
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMM

XP_004151090.1 protein RADIALIS-like 3 [Cucumis sativus]3.7e-3988.3Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSADEV+RHYE+LLEDLRRIESGRVPIPNYR   NRDEELRL+K +K
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK

XP_008447023.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]1.3e-3988.3Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSADEV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRL+K +K
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]1.8e-4192.55Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK
        MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERW NIA  VGGKS DEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRL+K +K
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK

XP_038888996.1 protein RADIALIS-like 3 isoform X2 [Benincasa hispida]1.7e-3995.45Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELR
        MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERW NIA  VGGKS DEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELR
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELR

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein1.8e-3988.3Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSADEV+RHYE+LLEDLRRIESGRVPIPNYR   NRDEELRL+K +K
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK

A0A1S3BHB0 protein RADIALIS-like 36.2e-4088.3Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSADEV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRL+K +K
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK

A0A5D3DF44 Protein RADIALIS-like 32.8e-4090.32Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMM
        MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERWQNIAT VGGKSA+EV+RHYE+LLEDLR+IESGRVPIPNYRG  NRDEELRLVKMM
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMM

A0A6J1C2H2 protein RADIALIS-like 34.5e-3884.69Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR----GGGNRDEELRLVKMMK
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERWQNIA  VGGKSADEVKRHY++LLEDLRRIESGRVPIPNYR      GN DEELRL+K +K
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR----GGGNRDEELRLVKMMK

A0A6J1ICR6 protein RADIALIS-like 35.8e-3886.17Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKE PERW NIA  VGGKSADEVKRHYE+LLEDL+RIESGRVPIPNYRG  N DEELRL+K +K
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMK

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.9e-2462.96Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGG
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A VVGGK+ +EVKRHYE+L++D+  IE+G VP PNYR  G
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGG

Q1A173 Protein RADIALIS-like 65.6e-2260.26Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A  VGGK+ +EVKRHY++L+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR

Q58FS3 Transcription factor RADIALIS2.1e-2157.89Show/hide
Query:  WTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GGGNRDEELR
        W+AK+NK FE+ALA+YDK+TP+RW N+A  V G++ +EVK+HYE+L+ED++ IESG+VP PNYR  GG  + +E R
Subjt:  WTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR--GGGNRDEELR

Q6NNN0 Protein RADIALIS-like 35.1e-2359.76Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGN
        MAS+S+       +WT K+NKLFE+ALA YD++TP+RW N+A  VGGKSA+EV+RHYE+L+ D+  IESGR P PNYR  GN
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGN

Q8GW75 Protein RADIALIS-like 52.3e-2353.47Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLVKMM
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A  VG KSA+EVKRHY++L+EDL  IE   VP+P Y       +  G  D +LRL+K M
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLVKMM

Query:  K
        +
Subjt:  K

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.6e-2453.47Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLVKMM
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A  VG KSA+EVKRHY++L+EDL  IE   VP+P Y       +  G  D +LRL+K M
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNY-------RGGGNRDEELRLVKMM

Query:  K
        +
Subjt:  K

AT1G75250.1 RAD-like 64.0e-2360.26Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A  VGGK+ +EVKRHY++L+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR

AT1G75250.2 RAD-like 64.0e-2360.26Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A  VGGK+ +EVKRHY++L+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR

AT2G18328.1 RAD-like 46.4e-2160.26Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR
        MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA  VGGKS +EVKRHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYR

AT4G39250.1 RAD-like 15.6e-2562.96Show/hide
Query:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGG
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A VVGGK+ +EVKRHYE+L++D+  IE+G VP PNYR  G
Subjt:  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAAGCTCTTTGAAGCAACAACGACCGGAGACGACGTGGACGGCGAAGCAAAACAAGTTGTTCGAAAAGGCATTGGCGTTGTACGACAAAGAGACGCCTGAGAG
ATGGCAAAATATCGCCACGGTGGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACACTACGAAGTACTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACCGAGGCGGCGGCAATAGAGATGAAGAGTTGAGGTTAGTGAAGATGATGAAAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCAAGCTCTTTGAAGCAACAACGACCGGAGACGACGTGGACGGCGAAGCAAAACAAGTTGTTCGAAAAGGCATTGGCGTTGTACGACAAAGAGACGCCTGAGAG
ATGGCAAAATATCGCCACGGTGGTCGGCGGGAAGTCGGCCGACGAAGTTAAAAGACACTACGAAGTACTCTTGGAAGATCTCCGACGGATCGAGTCCGGTCGTGTTCCTA
TTCCCAATTACCGAGGCGGCGGCAATAGAGATGAAGAGTTGAGGTTAGTGAAGATGATGAAAAGATAG
Protein sequenceShow/hide protein sequence
MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWQNIATVVGGKSADEVKRHYEVLLEDLRRIESGRVPIPNYRGGGNRDEELRLVKMMKR