; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G011310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G011310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger protein GIS2
Genome locationchr11:19757390..19762582
RNA-Seq ExpressionLsi11G011310
SyntenyLsi11G011310
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148537.1 zinc finger protein GIS2 [Cucumis sativus]4.8e-15397.31Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGI SGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S RG  SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFM+R+PRRY
Subjt:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_008448055.1 PREDICTED: zinc finger protein GIS2 [Cucumis melo]9.6e-15498.08Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGI SGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S RG  SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFM+RYPRRY
Subjt:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_022136056.1 zinc finger protein GIS2 [Momordica charantia]1.5e-15196.55Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR DRGIGSGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGA-SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SVRGG+  GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGA-SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_022971383.1 zinc finger protein GIS2-like [Cucurbita maxima]3.4e-15196.15Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC N
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S+RGG  GYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

XP_038887879.1 zinc finger protein GIS2 [Benincasa hispida]5.1e-15598.46Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S RGGASGYRDVVCRNCQQLGHMSRDCMGPL+ICHNCGGRGHLAYECPSGRFM+RYPRRY
Subjt:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

TrEMBL top hitse value%identityAlignment
A0A0A0K138 Uncharacterized protein2.3e-15397.31Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRARDCTAPP+PPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGI SGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S RG  SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFM+R+PRRY
Subjt:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A1S3BIU7 zinc finger protein GIS24.6e-15498.08Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGI SGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S RG  SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFM+RYPRRY
Subjt:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1C2F8 zinc finger protein GIS27.4e-15296.55Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSPLDRKIRSDRF+YRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMA+SCPN
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSN+L DR DRGIGSGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGA-SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        SVRGG+  GYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGA-SGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1EYM8 zinc finger protein GIS2-like1.2e-14995.4Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC N
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLG+RGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVR-GGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S+R GG  GYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVR-GGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

A0A6J1I6P4 zinc finger protein GIS2-like1.6e-15196.15Show/hide
Query:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        MSSDSRSRSRSRSRSP+ RKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGH+ASSC N
Subjt:  MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
        EGICHTCGKAGHRAR+CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGG

Query:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY
        S+RGG  GYRDVVCR CQQLGHMSRDCM PLMICHNCGGRGHLAYECPSGRFMERYPRRY
Subjt:  SVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY

SwissProt top hitse value%identityAlignment
O42395 Cellular nucleic acid-binding protein6.9e-2236.69Show/hide
Query:  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--SLCWNCREPGHMASSC-----PNEGICHTCGKAGHRA
        N C  C R GH+ARECP                          IC+ CG  GH+A +C  +    C+NC   GH+A  C       E  C+ CGK GH A
Subjt:  NLCKNCKRPGHFARECPN-----------------------VAICHNCGLPGHIASECTTK--SLCWNCREPGHMASSC-----PNEGICHTCGKAGHRA

Query:  RDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC
        RDC        D + C +C + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Subjt:  RDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC

P36627 Cellular nucleic acid-binding protein homolog6.9e-2233.33Show/hide
Query:  CHNCGLPGHIASECTTKSLCWNCREPGHMASSC---PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC
        C+NCG  GH A ECT  S+C+NC + GH AS C     E  C+ CG AGH  RDC + P P      C  C + GHIA DC      +  R  GH     
Subjt:  CHNCGLPGHIASECTTKSLCWNCREPGHMASSC---PNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC

Query:  PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCM--GPLMICHNCGGRGHLAYECPS
         ++  C  C   GH AR C                              V C +C ++GH S +C       +C+ C   GH+A  C S
Subjt:  PNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCM--GPLMICHNCGGRGHLAYECPS

P53849 Zinc finger protein GIS28.7e-2535.57Show/hide
Query:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRL-CNNCYKQGHIA
        C  C + GH A +C +  +C+NC  PGH+ ++CT         C+NC E GH+ S C  +  C  C + GH +R+C  P       ++ C  C    H+A
Subjt:  CKNCKRPGHFARECPNVAICHNCGLPGHIASECTTK-----SLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRL-CNNCYKQGHIA

Query:  ADCTNEKA-----CNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKS
         DC  E       C  C + GH++RDC ND +C  CN +GH+++ CPK+
Subjt:  ADCTNEKA-----CNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKS

Q04832 DNA-binding protein HEXBP9.0e-3030.29Show/hide
Query:  CKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS--------LCWNCREPGHMASSCPNEG--------ICHTCGKAGHRARDCT----
        C+NC + GH+ARECP            C  CG  GH++ EC  ++         C+ C E GHM+  CPN           C+ CG+ GH +RDC     
Subjt:  CKNCKRPGHFARECPNV--------AICHNCGLPGHIASECTTKS--------LCWNCREPGHMASSCPNEG--------ICHTCGKAGHRARDCT----

Query:  --------------APPLPPGDLRLCNNCYKQGHIAADCTN---------EKACNNCRKTGHLARDCPN---------DPICNLCNVSGHVARQCPKSNV
                      A     GD R C  C   GHI+ DC N         ++ C  C   GH++RDCPN         D  C  C  SGH++R+CP +  
Subjt:  --------------APPLPPGDLRLCNNCYKQGHIAADCTN---------EKACNNCRKTGHLARDCPN---------DPICNLCNVSGHVARQCPKSNV

Query:  LGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCM-----------GPLMICHNCGGRGHLAYECPS
                          G++G  D  C  C + GH+SR+C            G    C+ CG  GH++ +CPS
Subjt:  LGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCM-----------GPLMICHNCGGRGHLAYECPS

Q3T0Q6 Cellular nucleic acid-binding protein3.1e-2237.13Show/hide
Query:  NLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASEC-TTKSLCWNCREPGHMASSC-----PNEGICHTCGKAGHRARD
        N C  C R GH+ARECP                         IC+ CG  GH+A +C   +  C+NC   GH+A  C       E  C+ CGK GH ARD
Subjt:  NLCKNCKRPGHFARECPNVA----------------------ICHNCGLPGHIASEC-TTKSLCWNCREPGHMASSC-----PNEGICHTCGKAGHRARD

Query:  CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC
        C        D + C +C + GHI  DCT  K C  C +TGH+A +C   ++  C  C  SGH+AR+C
Subjt:  CTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDC--PNDPICNLCNVSGHVARQC

Arabidopsis top hitse value%identityAlignment
AT1G75560.1 zinc knuckle (CCHC-type) family protein5.3e-9463.88Show/hide
Query:  SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        S SRSR R RSRSP DR++RS+R SY DAP R  RE RR FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHIA+ECT +S CWNCREPGH+AS+C N
Subjt:  SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNV-LGDRGDRGIGSGG
        EGICH+CGK+GHRARDC+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK +    DRG R     G
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNV-LGDRGDRGIGSGG

Query:  GSVRGGASGYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMERYPRRY
        G  RGG              L  MSRD  G   ++ICHNCGGRGH AYECPS R  +R  RRY
Subjt:  GSVRGGASGYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMERYPRRY

AT1G75560.2 zinc knuckle (CCHC-type) family protein5.3e-9463.88Show/hide
Query:  SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN
        S SRSR R RSRSP DR++RS+R SY DAP R  RE RR FS+ NLC NCKRPGHFAR+C NV++C+NCGLPGHIA+ECT +S CWNCREPGH+AS+C N
Subjt:  SDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYR--RESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPN

Query:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNV-LGDRGDRGIGSGG
        EGICH+CGK+GHRARDC+      GDLRLCNNC+KQGH+AADCTN+KAC NCR +GH+ARDC NDP+CN+C++SGHVAR CPK +    DRG R     G
Subjt:  EGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNV-LGDRGDRGIGSGG

Query:  GSVRGGASGYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMERYPRRY
        G  RGG              L  MSRD  G   ++ICHNCGGRGH AYECPS R  +R  RRY
Subjt:  GSVRGGASGYRDVVCRNCQQLGHMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMERYPRRY

AT2G17870.1 cold shock domain protein 32.6e-1632.82Show/hide
Query:  CHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTA-----PPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLAR
        C NCG  GH+A +C   S   +    G   S    EG C+ CG  GH ARDC            G  R C +C + GH+A DC      N  R  G   R
Subjt:  CHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTA-----PPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLAR

Query:  DCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPL--------MICHNCGGRGHLAYEC
            D  C +C   GH AR C +             +GGG+V GG S      C  C  +GH+++ C   +          C+ CGG GHLA +C
Subjt:  DCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPL--------MICHNCGGRGHLAYEC

AT3G43590.1 zinc knuckle (CCHC-type) family protein2.1e-1326.24Show/hide
Query:  CHNCGLPGHIASECTT----KSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKA--------CNNCR
        C++CG  GH +  C T    +  C+ C    H A  C     C+ C K GHRA+DC           +C  C   GH    C  E +        C  C+
Subjt:  CHNCGLPGHIASECTT----KSLCWNCREPGHMASSCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKA--------CNNCR

Query:  KTGHLARDCPNDPI-----CNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMI-----------CHNC
          GHL    P + +     C  C   GH    C +     +  D        + R  +  YR      C + GH +R+C     I           C+ C
Subjt:  KTGHLARDCPNDPI-----CNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDCMGPLMI-----------CHNC

Query:  GGRGHLAYECPSGRFMERYPR
         G GH A ECP+   + +  R
Subjt:  GGRGHLAYECPSGRFMERYPR

AT4G36020.1 cold shock domain protein 18.7e-2030.77Show/hide
Query:  NLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC-------------TTKSLCWNCREPGHMASSCPNEGI-------------CHTCGKAGHRARDCT
        +L K     G+ AR     + C+NCG  GHI+ +C                  C+NC + GH A  C + G              C+TCG  GH ARDCT
Subjt:  NLCKNCKRPGHFARECPNVAICHNCGLPGHIASEC-------------TTKSLCWNCREPGHMASSCPNEGI-------------CHTCGKAGHRARDCT

Query:  APPLPPGDLR--------LCNNCYKQGHIAADCTNEKA-------------CNNCRKTGHLARDCPN----DPICNLCNVSGHVARQCPKSNVLGDRGDR
           +  GD R         C  C   GH A DCT + A             C +C   GH+ARDC         C  C  SGH+AR C +          
Subjt:  APPLPPGDLR--------LCNNCYKQGHIAADCTNEKA-------------CNNCRKTGHLARDCPN----DPICNLCNVSGHVARQCPKSNVLGDRGDR

Query:  GIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDC
          GSGGG          D  C  C + GH +R+C
Subjt:  GIGSGGGSVRGGASGYRDVVCRNCQQLGHMSRDC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGATAGCAGGAGTCGAAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGCTCTGATCGTTTTTCCTATCGTGATGCACCATACAGGAGAGAATC
ACGTCGGGGTTTCAGTCGAGACAATCTTTGCAAGAATTGCAAGCGACCTGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGC
ATATTGCTTCAGAGTGCACAACAAAGTCACTATGTTGGAACTGTCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACTTGTGGTAAGGCG
GGACATCGGGCCAGGGATTGCACAGCTCCTCCGCTGCCACCGGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCTGCTGATTGCACGAATGAGAA
GGCATGCAACAATTGCAGGAAGACTGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGT
CCAACGTCCTCGGAGACCGGGGAGACCGAGGCATCGGCAGTGGTGGTGGAAGTGTACGTGGTGGTGCTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTT
GGCCATATGAGTAGGGATTGCATGGGCCCTTTGATGATCTGCCATAATTGTGGGGGACGTGGTCACTTGGCATACGAATGTCCTTCTGGTCGGTTTATGGAGCGTTATCC
TAGGAGGTACTAA
mRNA sequenceShow/hide mRNA sequence
CTGCACTTCACAAATCTTCGTTCTTCAGCGGCTGTTCTCCCACGAATCTCATCCCGCTGCAGCTTCGTTCGTAATTTTGCATCTTCAGCCATTTGACCTTCGGCAATATC
GGCCACAAGTACATAGCCATTGGCATTAGTGTTGGTACTGATCATAAGGTTGTTCATAATCGGTGGGAAGAAATTGATTGTTCATAAGCTTCAACATTTTTGGCCACATT
CATATTGGTCTCTTTCCATATCTCCTTCAGTTGGATTGTAGTTGTTCCCACCAATCGAAGGCCTCACTCTCAAGTTTAAAAGCAACCAACTTAACCTTTTTGTTTTTTGG
GGTACCAATGTATTCCAAAAAGGTTTCAACGTCCTTAATCCCGTAAAAAAAACTCCTTTAGATCCAATTTCCCACTAAATGTGGGGAGGTTTATTTTCGTCTTATAATCC
CCATAATTGGTCGGGTTAACTTGCTGATACAATGGCTTTTCATTGATAAATGGGACTTGTCGGAGTAGGTCCTCATCCTCTTCAATCGAGCGATCTATTTCAAGTAATTT
AGGCCCGTCTAATGGAGGTCTACGGCTGGTTGAAGTTTCTTGGAGGTTCTTGAATATCCTGGCGAACTTCTTGAACCCTTCTTGGTGCTGGAAATTGTTGAACTTTCTGG
GGGAGGAGGCAGCATCGGTGTGATATTTTGGTGGTGGTGGTATTTTCACGAATCAGTGGGGATAAGTATTGAAGGATAAGTTTGGAAATGAGTTCAGATAGCAGGAGTCG
AAGCAGGAGCAGAAGCAGGAGCCCACTGGATCGTAAGATCCGCTCTGATCGTTTTTCCTATCGTGATGCACCATACAGGAGAGAATCACGTCGGGGTTTCAGTCGAGACA
ATCTTTGCAAGAATTGCAAGCGACCTGGCCATTTTGCAAGAGAATGTCCCAATGTGGCAATTTGTCACAATTGTGGTCTCCCTGGGCATATTGCTTCAGAGTGCACAACA
AAGTCACTATGTTGGAACTGTCGAGAACCTGGTCACATGGCAAGTAGCTGTCCCAATGAAGGCATTTGCCACACTTGTGGTAAGGCGGGACATCGGGCCAGGGATTGCAC
AGCTCCTCCGCTGCCACCGGGGGACTTGAGGCTTTGCAATAATTGCTACAAGCAAGGTCATATAGCTGCTGATTGCACGAATGAGAAGGCATGCAACAATTGCAGGAAGA
CTGGCCATCTTGCTCGCGATTGTCCAAATGACCCTATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCAAAGTCCAACGTCCTCGGAGACCGGGGA
GACCGAGGCATCGGCAGTGGTGGTGGAAGTGTACGTGGTGGTGCTAGTGGTTACCGGGACGTTGTGTGCAGGAACTGCCAGCAGCTTGGCCATATGAGTAGGGATTGCAT
GGGCCCTTTGATGATCTGCCATAATTGTGGGGGACGTGGTCACTTGGCATACGAATGTCCTTCTGGTCGGTTTATGGAGCGTTATCCTAGGAGGTACTAATGATCAAAAG
AGCTAGACATATGCGTTAGACCTTTGGATTTTGCTTCGAGTTTAGACAATTCGGGAACTAAACTCTATAGATTGCTCTACTTGCTTATGTTGTAGTATTTGCTTGTGCTA
TGTACCAATCATTGTTTTACGCTTTAAGACGATGAATTTTCAGTATTGTTGATTTTGGTTCTATATAATAAGACTTTCTATCAATGATTCAGTAGTTGTTGATTTTCCTC
GTGTTAATTGTAAACTATGAATTATGATTTATTTTGAGATGCTAGTTGTAAACTTTTAACTTACATTACACATCTGGATTATAAGTCTATTCCTTCTCAGTGGTGCTAAG
GC
Protein sequenceShow/hide protein sequence
MSSDSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECPNVAICHNCGLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKA
GHRARDCTAPPLPPGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKSNVLGDRGDRGIGSGGGSVRGGASGYRDVVCRNCQQL
GHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMERYPRRY