CuGenDBv2

Gene ID	Lsi11G011970
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ubiquitin-conjugating enzyme, E2
Genome location	chr11:20474248..20477367
RNA-Seq Expression	Lsi11G011970
Synteny	Lsi11G011970
Gene Ontology terms	GO:0000209 - protein polyubiquitination (biological process) GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0061631 - ubiquitin conjugating enzyme activity (molecular function)
InterPro domains	IPR000608 - Ubiquitin-conjugating enzyme E2 IPR016135 - Ubiquitin-conjugating enzyme/RWD-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8724931.1 Ubiquitin-conjugating enzyme E2 10 [Hibiscus syriacus]

5.8e-52

90.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GP DSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        +TARSWTQKYAMG
Subjt:  STARSWTQKYAMG

KAF3635757.1 Ubiquitin-conjugating enzyme E2 5B [Capsicum annuum]

2.6e-52

90.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQAT++GPSDSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        +TARSWTQKYAMG
Subjt:  STARSWTQKYAMG

KAF6143012.1 hypothetical protein GIB67_041080 [Kingdonia uniflora]

2.6e-52

90.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GP+DSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        STARSWTQKYAMG
Subjt:  STARSWTQKYAMG

KAG5414196.1 hypothetical protein IGI04_001763 [Brassica rapa subsp. trilocularis]

2.6e-52

91.15

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        STAR+WTQKY MG
Subjt:  STARSWTQKYAMG

THU59509.1 hypothetical protein C4D60_Mb07t02860 [Musa balbisiana]

9.8e-52

89.38

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GP DSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        +TARSWTQKYAMG
Subjt:  STARSWTQKYAMG

TrEMBL top hits

e value

%identity

Alignment

A0A0D3F3B2 UBC core domain-containing protein

9.6e-53

90.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQAT++GPSDSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        STARSWTQKYAMG
Subjt:  STARSWTQKYAMG

A0A0D9YQ50 UBC core domain-containing protein

9.6e-53

90.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQAT++GPSDSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        STARSWTQKYAMG
Subjt:  STARSWTQKYAMG

A0A0E0NCN8 UBC core domain-containing protein

9.6e-53

90.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQAT++GPSDSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        STARSWTQKYAMG
Subjt:  STARSWTQKYAMG

A0A6A3CAR5 Ubiquitin-conjugating enzyme E2 10

2.8e-52

90.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GP DSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        +TARSWTQKYAMG
Subjt:  STARSWTQKYAMG

A0A7J7LKE2 UBC core domain-containing protein

1.3e-52

90.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GP+DSPY+GGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYE
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYE

Query:  STARSWTQKYAMG
        STARSWTQKYAMG
Subjt:  STARSWTQKYAMG

SwissProt top hits

e value

%identity

Alignment

P35132 SUMO-conjugating enzyme UBC9

2.5e-50

70.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPSDSPYSGGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYESTAR+WTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

P35133 Ubiquitin-conjugating enzyme E2 10

7.3e-50

69.59

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPS+SPY+GGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYESTARSWTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

P35135 Ubiquitin-conjugating enzyme E2-17 kDa

4.8e-49

67.57

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GP+DSPY+GGVFLV+IHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYE+TARSWTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

Q8S919 Ubiquitin-conjugating enzyme E2 5B

5.6e-50

68.92

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQAT++GPSDSPY+GGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYESTARSWTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

Q94F47 Ubiquitin-conjugating enzyme E2 28

1.5e-50

70.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPSDSPYSGGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYESTARSWTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

Arabidopsis top hits

e value

%identity

Alignment

AT1G64230.1 ubiquitin-conjugating enzyme 28

1.0e-51

70.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPSDSPYSGGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYESTARSWTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

AT1G64230.2 ubiquitin-conjugating enzyme 28

1.0e-51

70.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPSDSPYSGGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTD+ KYESTARSWTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

AT4G27960.1 ubiquitin conjugating enzyme 9

1.8e-51

70.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPSDSPYSGGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYESTAR+WTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

AT4G27960.2 ubiquitin conjugating enzyme 9

1.8e-51

70.27

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPSDSPYSGGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYESTAR+WTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

AT5G53300.1 ubiquitin-conjugating enzyme 10

5.2e-51

69.59

Show/hide

Query:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------
        MASKRILKELKDLQ+DPPTSCS    AEDMFHWQATI+GPS+SPY+GGVFLVTIHFPPDYPFKPP                                   
Subjt:  MASKRILKELKDLQRDPPTSCS----AEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPP-----------------------------------

Query:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG
        KVLLSICSLLTDPNPDDPLVPEIAHM KTDK KYESTARSWTQKYAMG
Subjt:  KVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTTCCAAGAGAATATTGAAGGAGCTTAAAGACTTGCAGAGAGACCCACCAACTTCTTGCAGTGCAGAGGACATGTTTCATTGGCAAGCAACCATTATTGGTCCTAG
TGATAGTCCCTATTCTGGTGGAGTTTTTCTTGTTACCATTCATTTCCCTCCTGATTATCCTTTCAAACCTCCTAAGGTTTTGCTCTCAATTTGCTCCCTATTAACAGATC
CAAACCCAGATGATCCATTGGTTCCTGAGATTGCTCATATGTGCAAGACTGACAAAATCAAATATGAATCCACTGCTAGGAGCTGGACCCAGAAATATGCTATGGGTTAA

mRNA sequence

Show/hide mRNA sequence

CTCTATCCTCCCTTTTTTGGCCATTATATATAGCATTTCTATCCCTTTGCCTTGTGCAATATAAACCAAATATTTCTTGTTCTTCATCTTCTTCTCTTCATTAGTAGAAA
CAAAAGCTTAGAAGTTGCAGAAATGGCTTCCAAGAGAATATTGAAGGAGCTTAAAGACTTGCAGAGAGACCCACCAACTTCTTGCAGTGCAGAGGACATGTTTCATTGGC
AAGCAACCATTATTGGTCCTAGTGATAGTCCCTATTCTGGTGGAGTTTTTCTTGTTACCATTCATTTCCCTCCTGATTATCCTTTCAAACCTCCTAAGGTTTTGCTCTCA
ATTTGCTCCCTATTAACAGATCCAAACCCAGATGATCCATTGGTTCCTGAGATTGCTCATATGTGCAAGACTGACAAAATCAAATATGAATCCACTGCTAGGAGCTGGAC
CCAGAAATATGCTATGGGTTAAAAATTAAAATACAATCAAATCCAATTTTTCTATAATTTTGTATTGATTGAATCCTTTCTTAGTCTCCTCATCACTCTTTTTTTTTTTT
TTTCATTTAGAAAAAAATGTATTGATGGCCTAAAACTAAGGCTCTCTTGGCATCAAATTTAAAAAACCTATACATTTGCTTGGAATAATAATGATAATAATTATATAACA
ATATATGTCACAAAACTTTGGAGCTTTGAATATATCTATCTACATATTGTTGAAATTATGCTTGCTTAATTCATAATTCCTGATAAATTATTATACTTTGGGGAGAGAGT
TCTAGGAATTCAAAATATTGTTTCTACTTGCAAGTTGCAGTATTAGTAATGTGTATAATGATCATATCATTTTTGTTAAAAGTTAATACATAAATAAATAAATGCAATTT
TTTATCCTGAACTTTCGTGAAATTAACATAACAATTTAGTGTT

Protein sequence

Show/hide protein sequence

MASKRILKELKDLQRDPPTSCSAEDMFHWQATIIGPSDSPYSGGVFLVTIHFPPDYPFKPPKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKIKYESTARSWTQKYAMG

Lsi11G011970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome