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Lsi11G012490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G012490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionexpansin-like A2
Genome locationchr11:21121869..21125043
RNA-Seq ExpressionLsi11G012490
SyntenyLsi11G012490
Gene Ontology termsGO:0019953 - sexual reproduction (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR007112 - Expansin/pollen allergen, DPBB domain
IPR036908 - RlpA-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040365.1 expansin-like A1 [Cucumis melo var. makuwa]5.2e-2385.51Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR----YGNNH
        VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFS MARWG AQ LL+LGMVDIEYKR    Y N H
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR----YGNNH
XP_008448110.1 PREDICTED: expansin-like A1 [Cucumis melo]1.2e-2293.33Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFS MARWG AQ LL+LGMVDIEYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
XP_022136186.1 expansin-like A2 [Momordica charantia]1.1e-2393.33Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCKNKKLCSPIGAK+ LTDQNYDNRTDFVLSR+AFSEMARWG AQDLLKLGMVDIEYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
XP_022136189.1 expansin-like A1 [Momordica charantia]2.1e-1676.67Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCKN+ LC+  G K+VLTDQNYDNRTDFVLSRKAFS MA  GK Q+LLK G+VDIEYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
XP_038888778.1 expansin-like A2 [Benincasa hispida]8.9e-2393.33Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFS MARWG AQ L+KLGMVDIEYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
TrEMBL top hitse value%identityAlignment
A0A1S3BJJ6 expansin-like A15.6e-2393.33Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFS MARWG AQ LL+LGMVDIEYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
A0A4Y1S105 Expansin-like A12.3e-1652.87Show/hide
Query:  MVPWQMNLSMDSLLVQCLCFTNKELVVVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        MVPW  +L  D+L + CL  T  EL V+RCKN  LC+  G ++ LTD N  N+TDFVLS +AF  MA+ G  QD+L+ G+VD+EYKR
Subjt:  MVPWQMNLSMDSLLVQCLCFTNKELVVVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
A0A5D3DJD5 Expansin-like A12.5e-2385.51Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR----YGNNH
        VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFS MARWG AQ LL+LGMVDIEYKR    Y N H
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR----YGNNH
A0A6J1C2U1 expansin-like A25.1e-2493.33Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCKNKKLCSPIGAK+ LTDQNYDNRTDFVLSR+AFSEMARWG AQDLLKLGMVDIEYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
A0A6J1C3L3 expansin-like A11.0e-1676.67Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCKN+ LC+  G K+VLTDQNYDNRTDFVLSRKAFS MA  GK Q+LLK G+VDIEYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
SwissProt top hitse value%identityAlignment
Q10S70 Expansin-like A11.3e-1158.33Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCK+KKLCS  GA++V+TD+   NRT  VLS  AF+ MAR G A  L +L  VD+EYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
Q7XCL0 Expansin-like A22.0e-0955.74Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQ-NYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCK+ KLCS  GAK+V+TD+    NRTD VLS  A++ MAR G A  L     VD+EYKR
Subjt:  VRCKNKKLCSPIGAKIVLTDQ-NYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
Q9LZT4 Expansin-like A13.6e-1153.52Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKR----YGNNH
        VRCKN KLCS  G  +++TD N  N+TD VLS +AF  MA+   G  +DLLK G+VDIEY+R    YGN +
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKR----YGNNH
Q9LZT5 Expansin-like A34.5e-0949.25Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKRYGNNH
        VRCKN KLC+  G  +++TD N  N+TD VLS +AF  MA+   G  + LLK G+VD+EY+R   N+
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKRYGNNH
Q9SVE5 Expansin-like A28.1e-1153.62Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKR----YGN
        VRCKN  LCS  G  +++TD N  N+TD VLS +AF  MA+   G  +DLLK G+VDIEY+R    YGN
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKR----YGN
Arabidopsis top hitse value%identityAlignment
AT3G45960.1 expansin-like A33.2e-1049.25Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKRYGNNH
        VRCKN KLC+  G  +++TD N  N+TD VLS +AF  MA+   G  + LLK G+VD+EY+R   N+
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKRYGNNH
AT3G45960.2 expansin-like A33.2e-1049.25Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKRYGNNH
        VRCKN KLC+  G  +++TD N  N+TD VLS +AF  MA+   G  + LLK G+VD+EY+R   N+
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKRYGNNH
AT3G45970.1 expansin-like A12.6e-1253.52Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKR----YGNNH
        VRCKN KLCS  G  +++TD N  N+TD VLS +AF  MA+   G  +DLLK G+VDIEY+R    YGN +
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKR----YGNNH
AT4G17030.1 expansin-like B15.1e-0845Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
        VRCK    CS  G  +V TD    + TDF+LS KA+  MAR G    L   G+V++EY+R
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKR
AT4G38400.1 expansin-like A25.8e-1253.62Show/hide
Query:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKR----YGN
        VRCKN  LCS  G  +++TD N  N+TD VLS +AF  MA+   G  +DLLK G+VDIEY+R    YGN
Subjt:  VRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMAR--WGKAQDLLKLGMVDIEYKR----YGN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATGGGGCATGTGGCTATGGTTCCTTGGCAAATGAATCTTTCCATGGACTCATTGCTGGTGCAGTGCCTTTGCTTTACAAACAAGGAGCTGGTTGTGGTGAGATG
CAAGAACAAGAAGCTGTGCAGCCCAATAGGAGCCAAAATAGTTTTGACTGATCAAAATTATGATAACCGAACTGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGAAATGG
CTCGATGGGGCAAGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATCGAATACAAGAGGTACGGTAATAATCACGATTCAGAATTTCATATTAGAAAAATGAGAATA
CTTCACAATTTTTTTATGATACACAGGCGTTATTATTCATCTCATTGTCAATTAGTTATGAGACGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGATGGGGCATGTGGCTATGGTTCCTTGGCAAATGAATCTTTCCATGGACTCATTGCTGGTGCAGTGCCTTTGCTTTACAAACAAGGAGCTGGTTGTGGTGAGATG
CAAGAACAAGAAGCTGTGCAGCCCAATAGGAGCCAAAATAGTTTTGACTGATCAAAATTATGATAACCGAACTGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGAAATGG
CTCGATGGGGCAAGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATCGAATACAAGAGGTACGGTAATAATCACGATTCAGAATTTCATATTAGAAAAATGAGAATA
CTTCACAATTTTTTTATGATACACAGGCGTTATTATTCATCTCATTGTCAATTAGTTATGAGACGATAG
Protein sequenceShow/hide protein sequence
MVMGHVAMVPWQMNLSMDSLLVQCLCFTNKELVVVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKRYGNNHDSEFHIRKMRI
LHNFFMIHRRYYSSHCQLVMRR