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Lsi11G012570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G012570
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionExpansin-like A2
Genome locationchr11:21194039..21195271
RNA-Seq ExpressionLsi11G012570
SyntenyLsi11G012570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645685.1 hypothetical protein Csa_020282 [Cucumis sativus]5.9e-0761.82Show/hide
Query:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
        CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Subjt:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
KAG6572153.1 Expansin-like A2, partial [Cucurbita argyrosperma subsp. sororia]5.9e-0786.49Show/hide
Query:  MEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALAI
        M EHVVMA WPC+SLMASLQLL LPFTDKEL VALAI
Subjt:  MEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALAI
TYK23330.1 expansin-like A2 [Cucumis melo var. makuwa]8.0e-1256.38Show/hide
Query:  MLVIVVFINLK-LATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALA------ISKRAFFTMALNGKGADLLNLGVVDVEYKR
        MLVIVVF NL+ L T  IH  HME HV M IWP   L A LQ LSL   +KE VV LA      +S++AF  MAL+GKG  LL  G+VD+EYKR
Subjt:  MLVIVVFINLK-LATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALA------ISKRAFFTMALNGKGADLLNLGVVDVEYKR
XP_022136197.1 expansin-like A2 [Momordica charantia]1.0e-0660Show/hide
Query:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
        CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGV+DVEYKR
Subjt:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
XP_031744987.1 expansin-like A2 [Cucumis sativus]5.9e-0761.82Show/hide
Query:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
        CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Subjt:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
TrEMBL top hitse value%identityAlignment
A0A1S3BJD7 expansin-like A26.4e-0793.75Show/hide
Query:  LAISKRAFFTMALNGKGADLLNLGVVDVEYKR
        L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Subjt:  LAISKRAFFTMALNGKGADLLNLGVVDVEYKR
A0A5D3DIX9 Expansin-like A23.9e-1256.38Show/hide
Query:  MLVIVVFINLK-LATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALA------ISKRAFFTMALNGKGADLLNLGVVDVEYKR
        MLVIVVF NL+ L T  IH  HME HV M IWP   L A LQ LSL   +KE VV LA      +S++AF  MAL+GKG  LL  G+VD+EYKR
Subjt:  MLVIVVFINLK-LATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALA------ISKRAFFTMALNGKGADLLNLGVVDVEYKR
A0A5D3DJC4 Expansin-like A26.4e-0793.75Show/hide
Query:  LAISKRAFFTMALNGKGADLLNLGVVDVEYKR
        L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Subjt:  LAISKRAFFTMALNGKGADLLNLGVVDVEYKR
A0A6J1C4W7 expansin-like A24.9e-0760Show/hide
Query:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
        CN++   + L      + + V  L +SKRAFFTMALNGKGADLLNLGV+DVEYKR
Subjt:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
A0A6J1GKX8 expansin-like A34.9e-0761.82Show/hide
Query:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
        CN+L   + L      + +    L +SKRAFFTMALNGKGADLLNLGVVDVEYKR
Subjt:  CNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGAGCATGTGGTTATGGCAATATGGCCTTGCAATTCTCTAAT
GGCTTCTTTGCAGCTGCTGTCCCTTCCCTTTACAGACAAGGAGCTGGTTGTGGCGCTTGCTATCAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAG
ACCTGTTGAATCTTGGAGTTGTTGATGTTGAATATAAGAGGTAG
mRNA sequenceShow/hide mRNA sequence
AATTAACCCTAAAGAATTTTCTTAATTAATTAGCAAAATTAATGGCTTGGTTATTTCTTGGTTTTCTCTTTCTCTTTTTAATTTCTTCTACTAATGCTTGTGATCGTTGT
GTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGAGCATGTGGTTATGGCAATATGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGC
TGTCCCTTCCCTTTACAGACAAGGAGCTGGTTGTGGCGCTTGCTATCAGTAAAAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGTTGAATCTTGGA
GTTGTTGATGTTGAATATAAGAGGTAG
Protein sequenceShow/hide protein sequence
MLVIVVFINLKLATFMIHLLHMEEHVVMAIWPCNSLMASLQLLSLPFTDKELVVALAISKRAFFTMALNGKGADLLNLGVVDVEYKR