CuGenDBv2

Gene ID	Lsi11G012910
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Genome location	chr11:21553113..21559604
RNA-Seq Expression	Lsi11G012910
Synteny	Lsi11G012910
Gene Ontology terms	GO:0005635 - nuclear envelope (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR029159 - Casein Kinase 2 substrate IPR038985 - At5g43822-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144893.1 uncharacterized protein At5g43822 isoform X2 [Cucumis sativus]

4.9e-94

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALL KQMESLQLS  SIKKTMEELGNIV SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQ QQK+GLKPSLEDC+NGLMLLC MHRSEYNLKESI SALPELFWKARN+ AQDLSSL QLLVDQPNI+KEEVEF+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

XP_008447827.1 PREDICTED: uncharacterized protein At5g43822 isoform X1 [Cucumis melo]

3.2e-93

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQ QQ++GLKPSLEDC+NGLM+LC+MHRSEY+LKESI SALPELFWKARN+ AQDLSSL QLLVDQPNI+KEEV+F+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

XP_008447828.1 PREDICTED: uncharacterized protein At5g43822 isoform X3 [Cucumis melo]

1.9e-90

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGR   LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQ QQ++GLKPSLEDC+NGLM+LC+MHRSEY+LKESI SALPELFWKARN+ AQDLSSL QLLVDQPNI+KEEV+F+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

XP_022928127.1 uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]

1.3e-91

88.5

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQF NASSIIGRLQ+LQDP N+GSL+GMDGIVDALL KQMESLQL   SI KTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQL+KGGSNQPS KQ QQ++GLKPSLEDC+NGL LLCDMHRSEY+LKES+ SALPELFWK RN+ AQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

XP_038888509.1 uncharacterized protein At5g43822 isoform X1 [Benincasa hispida]

8.6e-91

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDE+DRWDELQVRLISQFQN SSIIGR+Q+LQDPKNFGSLAGMDGIVDALLGKQMESLQLS  SIKKTMEELGNIVRSMEKI RD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPS+KQ QQ++GLKPSLEDC+NGLMLLC+MHRSEYNLKESI SAL ELFWKA   RAQDLSSLQQLLVDQPNIRKEEVEFIF+TILV EA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4X9 Uncharacterized protein

2.4e-94

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALL KQMESLQLS  SIKKTMEELGNIV SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQ QQK+GLKPSLEDC+NGLMLLC MHRSEYNLKESI SALPELFWKARN+ AQDLSSL QLLVDQPNI+KEEVEF+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

A0A1S3BIA7 uncharacterized protein At5g43822 isoform X1

1.5e-93

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQ QQ++GLKPSLEDC+NGLM+LC+MHRSEY+LKESI SALPELFWKARN+ AQDLSSL QLLVDQPNI+KEEV+F+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

A0A1S3BIY0 uncharacterized protein At5g43822 isoform X3

9.3e-91

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGR   LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQ QQ++GLKPSLEDC+NGLM+LC+MHRSEY+LKESI SALPELFWKARN+ AQDLSSL QLLVDQPNI+KEEV+F+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

A0A1S4DWT4 uncharacterized protein At5g43822 isoform X2

9.3e-91

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQ+LQDPKNFGSL+GMDGIV+ALLGKQMESLQLS  SIKKTMEELGN+V SMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLVKGGSNQPSIKQ QQ++GLKPSLEDC+NGLM+LC+MHRS+  LKESI SALPELFWKARN+ AQDLSSL QLLVDQPNI+KEEV+F+FDTILV EA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

A0A6J1EJ12 uncharacterized protein At5g43822 isoform X3

6.4e-92

88.5

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQF NASSIIGRLQ+LQDP N+GSL+GMDGIVDALL KQMESLQL   SI KTMEELGNIVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQL+KGGSNQPS KQ QQ++GLKPSLEDC+NGL LLCDMHRSEY+LKES+ SALPELFWK RN+ AQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

SwissProt top hits

e value

%identity

Alignment

Q6NPG7 Uncharacterized protein At5g43822

6.5e-41

47.24

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEA+++K+QQ+FRK K+EM++W+ LQVR +S F+NASSII RLQ +Q+  ++G+L  + GI DA++ +QM  L+  + S+K  MEE    V + EK++RD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE
        G QL +  S++   ++ +++IG+KP + DC+ GL +L DMH+SEY+LK SI S L  L  K       DL++LQ L+VDQPNI K+EV+ IFD I   E
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE

Arabidopsis top hits

e value

%identity

Alignment

AT5G43822.1 Pentatricopeptide repeat (PPR) superfamily protein

4.6e-42

47.24

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD
        MEA+++K+QQ+FRK K+EM++W+ LQVR +S F+NASSII RLQ +Q+  ++G+L  + GI DA++ +QM  L+  + S+K  MEE    V + EK++RD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLAGMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRD

Query:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE
        G QL +  S++   ++ +++IG+KP + DC+ GL +L DMH+SEY+LK SI S L  L  K       DL++LQ L+VDQPNI K+EV+ IFD I   E
Subjt:  GKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYRAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

CGACGACTAACACCGGCCTGTGAAGCCCAACCCACAGCGGCACAAGCTCCTTCCTGTAGCGGTGGTGCTCTATCCACGAACCACGACGCCCAAATCTACCTACGGCGGCG
CGATTCCCCTGCTGTCTTCTCAGTAACGGCGGTGTTTCTGAAATTCCAATCTATGGAGGCCATGGTGAAAAAGTATCAGCAAAGATTTAGAAAGTTCAAAGATGAAATGG
ATCGCTGGGATGAACTTCAAGTTCGTTTAATTTCGCAGTTCCAAAATGCTTCCTCCATCATCGGGAGGCTGCAGATGCTTCAAGATCCTAAGAATTTTGGAAGTCTGGCT
GGCATGGATGGCATTGTAGATGCGTTATTGGGGAAGCAGATGGAATCCTTGCAACTTAGTATCATGTCTATTAAGAAAACAATGGAAGAACTTGGGAATATTGTCCGTTC
AATGGAGAAGATTTATCGTGATGGGAAGCAATTAGTCAAAGGTGGTTCCAATCAGCCATCAATAAAACAACAACAACAAAAAATTGGTTTGAAACCCAGCCTTGAAGATT
GCGTGAATGGGTTAATGCTTCTCTGCGACATGCACCGCTCTGAGTACAATCTTAAAGAATCTATCTTCTCAGCACTTCCAGAACTTTTCTGGAAAGCTAGGAATTATAGA
GCGCAAGATCTCAGCTCCTTACAGCAACTCTTGGTTGACCAACCTAACATTCGGAAAGAGGAAGTTGAATTCATCTTTGATACTATACTGGTCCCAGAAGCCTAGCGAAT
ATGAGATAATCAAACAATTCAAGAACATTTGATGTCTTCCACATGCATTTTTCCGCACGATTAGCCGGAAAATGGAAGAGTTGATCAAACCAAAAATCCAACAAGAAGAT
GAAGCATCAAGGATTTGTTAATACGAGCTATGCTCAGTAATGACTCAAAGGTAGATTTGATCTTCTCTTGCTTGCAATTGTTGAACTACCTAGTGAATTTTTTTTTTTTC
TTTGGGCCTCTTTGGCATTTGGAGAGTAGATTTGTGAAGCCCCTCTGGTAACCCTTTTATTTTTTATTTTTGGTTTTTGAAAATTAAGCATATTTTCTCCAAATTTCTTA
CAATGATTAGTATCTTACTTAAATAATAGAATTGCAATCTTAGCTAAATTTCAAAAAGAATGGTAAAATCATGTAGATAAAAAACAAGAAATTTAGAGGTGGTTGAAGAG
TTTATAGGCTTAATTTTCAAAAATCAAAAATAAAAAATCAAATACAAACGTGGCCAAAACTATTTGGGTTGCATTTTTTAAATGGATGGATAAATTGGATAGCCCAAAGC
AGAATAAGAAAGGGAAGAAAATTAAATATTACGGATTGTGTTAAAATCATGGAATTATAATTTTTAAAGCTTAGATTTGTGTCGATTTTTTAGGTGTCAATTTTTGCATA
GTGCTATATTAACCTTGAATTCTGAATTTCAATTTTTTC

Protein sequence

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RRLTPACEAQPTAAQAPSCSGGALSTNHDAQIYLRRRDSPAVFSVTAVFLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFQNASSIIGRLQMLQDPKNFGSLA
GMDGIVDALLGKQMESLQLSIMSIKKTMEELGNIVRSMEKIYRDGKQLVKGGSNQPSIKQQQQKIGLKPSLEDCVNGLMLLCDMHRSEYNLKESIFSALPELFWKARNYR
AQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Lsi11G012910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome