; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G012990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G012990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr11:21622167..21622628
RNA-Seq ExpressionLsi11G012990
SyntenyLsi11G012990
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059605.1 hypothetical protein E6C27_scaffold54G00270 [Cucumis melo var. makuwa]8.1e-6886.5Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPD--SAQTLRRRLSSISFKIQPISSPVTSW-PFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMN--
        MTSIP R FLPT PLNDALP+SQPD  S+QTLRRRLSSISFKI PISSP+TSW  FRRSKSVSSMRDFT +SLRKWWDWGWSWILSRK+AFARDLEMN  
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPD--SAQTLRRRLSSISFKIQPISSPVTSW-PFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMN--

Query:  --DEETKALGSN--CRGS--FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK
          DEETKALGSN  CRGS  FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK
Subjt:  --DEETKALGSN--CRGS--FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK

KAG7022775.1 hypothetical protein SDJN02_16511, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-7693.46Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK
        MTSIP RSFLPTRPLNDALPVSQPDS QTLRRRLSSISFKIQPISSPVTSW F RSKSVSS+RD TG SLRKWWDWGWSWILSRKAAFARDLEMNDEETK
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK

Query:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS
        +L SNCRGSF+HLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS
Subjt:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS

XP_022135907.1 uncharacterized protein LOC111007745 [Momordica charantia]4.4e-7488.89Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK
        MT +P RSFLPTRPLNDALPVS PDS QTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMR+++GSSLRKWWDWGWSWILSRKA FA+DLE+ND+ETK
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK

Query:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS
        +LGSNCRGS++HLFYKVRSEFRKL+RSDRVGLPQTFKYDSVNYSKNFDDGVK+
Subjt:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS

XP_022928235.1 uncharacterized protein LOC111435129 [Cucurbita moschata]5.2e-7591.5Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK
        MTSIP RSFLPTRPLNDALPVSQPDS QTLRRRLSSISFKIQPISSPVTSW F RSKSVSS+RD TG SLRKWWDWGWSWILSRKAAFARDLEMNDEETK
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK

Query:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS
        +L SNCRGSF+HLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDG+++
Subjt:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS

XP_038888269.1 uncharacterized protein LOC120078122 [Benincasa hispida]1.3e-7895.42Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK
        M SIP RSFLPTRPLNDALPVSQPDSAQT+RRRLSSISFKIQPISSPV SWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAF RDLEMNDEETK
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK

Query:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS
        ALGSNCRGSF+HLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGV+S
Subjt:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS

TrEMBL top hitse value%identityAlignment
A0A0A0K1L8 Uncharacterized protein6.2e-6684.05Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPD--SAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMND--
        MTSIPGR FLPT PLNDALP+SQP   S QTLRRRLSSISFKI PISSP+TSW F RSKS+SSMRDFT +SLRKWWDWGWSWILSRKAAFARDLEMND  
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPD--SAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMND--

Query:  ---EETKALGS--NCRGS--FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK
           E TKALGS  + RGS  FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK
Subjt:  ---EETKALGS--NCRGS--FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK

A0A2I4FBL9 uncharacterized protein LOC1089972845.5e-5470.55Show/hide
Query:  RSFLPTRPLNDALPVSQPDS-AQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSN
        RSF+P  P   ALPVSQ DS  Q LRRRLSS+S KIQPI+SP TSW FRRSKSVSSM ++ GSS+R+WWDWGWSWILSRK  FA+DLE+N+EE K LGS+
Subjt:  RSFLPTRPLNDALPVSQPDS-AQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSN

Query:  CRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGV
         +GS++H+FYKVRSE RKL+ SD VGLPQT++YDS NYS+NFDDG+
Subjt:  CRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGV

A0A5A7V189 Uncharacterized protein3.9e-6886.5Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPD--SAQTLRRRLSSISFKIQPISSPVTSW-PFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMN--
        MTSIP R FLPT PLNDALP+SQPD  S+QTLRRRLSSISFKI PISSP+TSW  FRRSKSVSSMRDFT +SLRKWWDWGWSWILSRK+AFARDLEMN  
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPD--SAQTLRRRLSSISFKIQPISSPVTSW-PFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMN--

Query:  --DEETKALGSN--CRGS--FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK
          DEETKALGSN  CRGS  FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK
Subjt:  --DEETKALGSN--CRGS--FKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVK

A0A6J1C433 uncharacterized protein LOC1110077452.1e-7488.89Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK
        MT +P RSFLPTRPLNDALPVS PDS QTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMR+++GSSLRKWWDWGWSWILSRKA FA+DLE+ND+ETK
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK

Query:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS
        +LGSNCRGS++HLFYKVRSEFRKL+RSDRVGLPQTFKYDSVNYSKNFDDGVK+
Subjt:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS

A0A6J1ER56 uncharacterized protein LOC1114351292.5e-7591.5Show/hide
Query:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK
        MTSIP RSFLPTRPLNDALPVSQPDS QTLRRRLSSISFKIQPISSPVTSW F RSKSVSS+RD TG SLRKWWDWGWSWILSRKAAFARDLEMNDEETK
Subjt:  MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETK

Query:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS
        +L SNCRGSF+HLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDG+++
Subjt:  ALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G17300.1 unknown protein7.1e-2246.4Show/hide
Query:  ALPVSQ--PDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRK-AAFARDLEMNDEETK-ALGSNCRGSFKHL
        +LP+S    D    LRRRLSS+S  +        S    RSKSVS M +  GSS+++WW+W WSWIL +K   F  DLE+N  ETK +LG+  RGSF H+
Subjt:  ALPVSQ--PDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRK-AAFARDLEMNDEETK-ALGSNCRGSFKHL

Query:  FYKVRSEFRKLIRSDRVGLPQTFKY
        F+K+RSE R+L+R     LP + K+
Subjt:  FYKVRSEFRKLIRSDRVGLPQTFKY

AT4G35320.1 unknown protein6.2e-2647.69Show/hide
Query:  ALPVSQ-PDSAQT-------LRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGS
        +LPVSQ P++A T       +RRRLSS+S  +    + + +  F RSKSVS+M +  GSS+++WW+WGWSWILSRK  F RDLE+N +E K++GS  RGS
Subjt:  ALPVSQ-PDSAQT-------LRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGS

Query:  FKHLFYKVRSEFRKLI-RSDRVGLPQTFKY
          H+F+K+RS+ R  +  S    LP + KY
Subjt:  FKHLFYKVRSEFRKLI-RSDRVGLPQTFKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCCATTCCAGGGCGGAGCTTTCTACCGACGCGGCCTCTCAATGACGCACTCCCTGTCTCCCAGCCGGACTCCGCTCAAACCCTACGCCGAAGGCTCTCTTCCAT
TTCCTTCAAGATCCAGCCGATTTCTTCGCCTGTTACTTCCTGGCCGTTTCGAAGATCCAAATCCGTGTCGTCAATGCGCGATTTCACCGGAAGTTCTCTCCGTAAGTGGT
GGGATTGGGGATGGTCCTGGATCCTCTCTCGCAAAGCTGCCTTCGCTAGAGATCTGGAGATGAACGATGAAGAAACTAAAGCTCTTGGATCTAATTGCAGAGGTAGTTTC
AAGCATCTTTTCTATAAGGTTAGGTCTGAATTCCGTAAACTGATTCGCTCTGATCGTGTCGGTCTTCCTCAAACTTTCAAATACGATTCGGTTAATTACTCGAAGAATTT
CGATGATGGAGTAAAATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTCCATTCCAGGGCGGAGCTTTCTACCGACGCGGCCTCTCAATGACGCACTCCCTGTCTCCCAGCCGGACTCCGCTCAAACCCTACGCCGAAGGCTCTCTTCCAT
TTCCTTCAAGATCCAGCCGATTTCTTCGCCTGTTACTTCCTGGCCGTTTCGAAGATCCAAATCCGTGTCGTCAATGCGCGATTTCACCGGAAGTTCTCTCCGTAAGTGGT
GGGATTGGGGATGGTCCTGGATCCTCTCTCGCAAAGCTGCCTTCGCTAGAGATCTGGAGATGAACGATGAAGAAACTAAAGCTCTTGGATCTAATTGCAGAGGTAGTTTC
AAGCATCTTTTCTATAAGGTTAGGTCTGAATTCCGTAAACTGATTCGCTCTGATCGTGTCGGTCTTCCTCAAACTTTCAAATACGATTCGGTTAATTACTCGAAGAATTT
CGATGATGGAGTAAAATCTTAG
Protein sequenceShow/hide protein sequence
MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGSF
KHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS