; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G013330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G013330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr11:21947612..21948786
RNA-Seq ExpressionLsi11G013330
SyntenyLsi11G013330
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044249 - Probable E3 ubiquitin-protein ligase XERICO-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572211.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia]1.0e-6790.71Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLN IL+N ALSIS+FKCIVRLILH+VGIR S PSSLVPSTDSFE+SSELGDSN GSSWSYLE+FRNRYPSIRFDKVQGSER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        FEPESE NHLSCGHLFHTECLEKWLDYWNITCPLCRTPL+
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

TYK19302.1 putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa]5.9e-6879.07Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPSS+VPSTDSFESSSELGD   GSSW+YL++FRNRYP IRFDKVQ SER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPTFVVSLLLASAFSFELMHCYF
        FEPES  NHLSCGHLFHTECLEKWLDYWNITCPLCRTPL      +     +   S+LLA AFSFE +   F
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPTFVVSLLLASAFSFELMHCYF

XP_023554631.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]2.2e-6790Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLN IL+N ALSIS+FKCIVRLILH++GIR S PSSLVPSTDSFE+SSELGDSN GSSWSYLE+FRNRYPSIRFDKVQGSER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        FEPESE NHLSCGHLFHTECLEKWLDYWNITCPLCRTPL+
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

XP_038887530.1 probable E3 ubiquitin-protein ligase XERICO isoform X1 [Benincasa hispida]2.0e-6892.86Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLNVILVNTALSISMFKCIVRLILHM+GIRLSWPSSLV STDSFESSSELGDSN GSSWSYLE+FRNRY SIRFDK+QGSER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        FEPESE N LSCGHLFHTECLEKWLDYWNITCPLCRTPL+
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

XP_038887531.1 probable E3 ubiquitin-protein ligase XERICO isoform X2 [Benincasa hispida]2.0e-6892.86Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLNVILVNTALSISMFKCIVRLILHM+GIRLSWPSSLV STDSFESSSELGDSN GSSWSYLE+FRNRY SIRFDK+QGSER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        FEPESE N LSCGHLFHTECLEKWLDYWNITCPLCRTPL+
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

TrEMBL top hitse value%identityAlignment
A0A1S3CFW8 probable E3 ubiquitin-protein ligase XERICO3.1e-6790Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPSS+VPSTDSFESSSELGD   GSSW+YL++FRNRYP IRFDKVQ SER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        FEPES  NHLSCGHLFHTECLEKWLDYWNITCPLCRTPL+
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

A0A5A7UYD7 Putative E3 ubiquitin-protein ligase XERICO isoform X25.9e-6688.57Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPSS+V STDSFE+SSELGDSN GSSW+YLE+FRNRYP IRFDKV+ S+  EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        FEPES  NHLSCGHLFHTECLEKWLDYWNITCPLCRTPL+
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

A0A5D3D707 Putative E3 ubiquitin-protein ligase XERICO2.8e-6879.07Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPSS+VPSTDSFESSSELGD   GSSW+YL++FRNRYP IRFDKVQ SER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPTFVVSLLLASAFSFELMHCYF
        FEPES  NHLSCGHLFHTECLEKWLDYWNITCPLCRTPL      +     +   S+LLA AFSFE +   F
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPTFVVSLLLASAFSFELMHCYF

A0A6J1GLE2 probable E3 ubiquitin-protein ligase XERICO2.4e-6789.29Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLN IL+N ALSIS+F+CIVRLILH++GIR S PSSLVPSTDSFE+SSELGDSN GSSWSYLE+FRNRYPSIRFDKVQGSER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        FEPESE NHLSCGHLFHTECLEKWLDYWNITCPLCRTPL+
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

A0A6J1HVX6 probable E3 ubiquitin-protein ligase XERICO1.1e-6790Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ
        LPAPSEGVLN IL+N ALSIS+FKCIVRLILH+VGIR S PSSLVPSTDSFE+SSELGDSN GSSWSYLE+FRNRYP+IRFDKVQGSER EHDCSVCLTQ
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQ

Query:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        FEPESE NHLSCGHLFHTECLEKWLDYWNITCPLCRTPL+
Subjt:  FEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

SwissProt top hitse value%identityAlignment
Q9SI09 Probable E3 ubiquitin-protein ligase XERICO1.6e-3657.14Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPS----TDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKV-QGSERCEHDCS
        LP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS PSS  PS    +    S+SE  D  +    SYLE FRNR P++RF+ + +  ++ +++CS
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPS----TDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKV-QGSERCEHDCS

Query:  VCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVL
        VCL++F+ +SE N L CGHLFH  CLEKW+DYWNITCPLCRTPL+V+
Subjt:  VCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVL

Q9SZL4 RING-H2 finger protein ATL185.4e-0837Show/hide
Query:  DKVQGSERCEHDCSVCLTQFEPESETNHL-SCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPTFVVSLLLASAFSFELMHCYFTFFVHGIG
        DK +  E C   C +CL +FE E    HL  C HLFH  C+E WL   ++TCPLCR+ ++       N       S L  S F F      F  F+H +G
Subjt:  DKVQGSERCEHDCSVCLTQFEPESETNHL-SCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPTFVVSLLLASAFSFELMHCYFTFFVHGIG

Q9XF92 Brassinosteroid-responsive RING protein 16.9e-1143.06Show/hide
Query:  IFRNRYPSIRFDKVQGS-ERCEHDCSVCLTQFEPESETNHL-SCGHLFHTECLEKWLDYWNITCPLCRTPLI
        + R   P I+F+++  S E    +C+VCL +FE E E   L +C H+FH  CL++W+D+   TCPLCRTP +
Subjt:  IFRNRYPSIRFDKVQGS-ERCEHDCSVCLTQFEPESETNHL-SCGHLFHTECLEKWLDYWNITCPLCRTPLI

Q9ZT50 E3 ubiquitin-protein ligase RHA2A1.1e-0850Show/hide
Query:  DCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        DC VCL++ +   E   L C H+FH +CLE WL  +N TCPLCR+ L+
Subjt:  DCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

Q9ZU51 E3 ubiquitin-protein ligase RHA2B7.6e-1037.84Show/hide
Query:  SYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        S L +  ++    R    + S+    DC VCL++ +   E   L C H+FH +CLE WL + N  CPLCR+PL+
Subjt:  SYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

Arabidopsis top hitse value%identityAlignment
AT1G67856.1 RING/U-box superfamily protein2.3e-1433.81Show/hide
Query:  PAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQF
        P  SEGV+ ++++NT +S+S+ K +VR +++MV            S+++ E+ ++  D +   S     I    + S+  ++   +ER   DC VCL  F
Subjt:  PAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQF

Query:  EPESETNHL-SCGHLFHTECLEKWLDYWNITCPLCRTPL
        + E E + L SC H FH+ CL+KW    + TCPLCR+ L
Subjt:  EPESETNHL-SCGHLFHTECLEKWLDYWNITCPLCRTPL

AT2G01150.1 RING-H2 finger protein 2B5.4e-1137.84Show/hide
Query:  SYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI
        S L +  ++    R    + S+    DC VCL++ +   E   L C H+FH +CLE WL + N  CPLCR+PL+
Subjt:  SYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLI

AT2G04240.1 RING/U-box superfamily protein1.2e-3757.14Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPS----TDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKV-QGSERCEHDCS
        LP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS PSS  PS    +    S+SE  D  +    SYLE FRNR P++RF+ + +  ++ +++CS
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPS----TDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKV-QGSERCEHDCS

Query:  VCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVL
        VCL++F+ +SE N L CGHLFH  CLEKW+DYWNITCPLCRTPL+V+
Subjt:  VCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVL

AT2G04240.2 RING/U-box superfamily protein1.2e-3757.14Show/hide
Query:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPS----TDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKV-QGSERCEHDCS
        LP PSEG+L VILVNTALSIS+ K IVR  L +VGI LS PSS  PS    +    S+SE  D  +    SYLE FRNR P++RF+ + +  ++ +++CS
Subjt:  LPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSSLVPS----TDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKV-QGSERCEHDCS

Query:  VCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVL
        VCL++F+ +SE N L CGHLFH  CLEKW+DYWNITCPLCRTPL+V+
Subjt:  VCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVL

AT3G61460.1 brassinosteroid-responsive RING-H24.9e-1243.06Show/hide
Query:  IFRNRYPSIRFDKVQGS-ERCEHDCSVCLTQFEPESETNHL-SCGHLFHTECLEKWLDYWNITCPLCRTPLI
        + R   P I+F+++  S E    +C+VCL +FE E E   L +C H+FH  CL++W+D+   TCPLCRTP +
Subjt:  IFRNRYPSIRFDKVQGS-ERCEHDCSVCLTQFEPESETNHL-SCGHLFHTECLEKWLDYWNITCPLCRTPLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTGGTGGAAGATTTTGAAATTGGATCTTTAGCCATAGGGTTTGCTTTTACAGAAATCCCATTCTTGAATGGTAGCTTTCAACTAGTGGATCATGATTCGTGTTT
TGCTTCTGCTGATCTCTATTTTCATCTTCCAGTTCGTACTTTCTCTGATGTGAAGAAAGGCTTGCTTGCAAGTTGCAACCTCTTAATCATTGTTCTCCCAGCTCCATCTG
AAGGGGTTCTGAATGTGATTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCA
TCCTTAGTCCCATCAACAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATTCTAATCTTGGCTCCTCTTGGAGTTACCTTGAGATTTTTCGAAACCGATATCCAAGTAT
CAGATTTGATAAAGTACAGGGCTCAGAACGTTGTGAACATGATTGCTCTGTCTGTTTAACTCAATTTGAACCTGAATCTGAGACAAATCACTTATCTTGTGGCCATCTTT
TTCACACAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATCGTACTCTTAAAGACAGTCGTGAACGCGTTTCCTACC
TTCGTCGTTTCTCTGCTTCTGGCTTCTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTACATGGAATTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTGGTGGAAGATTTTGAAATTGGATCTTTAGCCATAGGGTTTGCTTTTACAGAAATCCCATTCTTGAATGGTAGCTTTCAACTAGTGGATCATGATTCGTGTTT
TGCTTCTGCTGATCTCTATTTTCATCTTCCAGTTCGTACTTTCTCTGATGTGAAGAAAGGCTTGCTTGCAAGTTGCAACCTCTTAATCATTGTTCTCCCAGCTCCATCTG
AAGGGGTTCTGAATGTGATTCTTGTAAACACTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCA
TCCTTAGTCCCATCAACAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATTCTAATCTTGGCTCCTCTTGGAGTTACCTTGAGATTTTTCGAAACCGATATCCAAGTAT
CAGATTTGATAAAGTACAGGGCTCAGAACGTTGTGAACATGATTGCTCTGTCTGTTTAACTCAATTTGAACCTGAATCTGAGACAAATCACTTATCTTGTGGCCATCTTT
TTCACACAGAATGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGTCCTCTTTGCAGAACTCCTCTAATCGTACTCTTAAAGACAGTCGTGAACGCGTTTCCTACC
TTCGTCGTTTCTCTGCTTCTGGCTTCTGCCTTTAGCTTTGAGTTAATGCACTGTTACTTCACTTTCTTTGTACATGGAATTGGCTGA
Protein sequenceShow/hide protein sequence
MFLVEDFEIGSLAIGFAFTEIPFLNGSFQLVDHDSCFASADLYFHLPVRTFSDVKKGLLASCNLLIIVLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPS
SLVPSTDSFESSSELGDSNLGSSWSYLEIFRNRYPSIRFDKVQGSERCEHDCSVCLTQFEPESETNHLSCGHLFHTECLEKWLDYWNITCPLCRTPLIVLLKTVVNAFPT
FVVSLLLASAFSFELMHCYFTFFVHGIG