CuGenDBv2

Gene ID	Lsi11G013510
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein SNE-like
Genome location	chr11:22129241..22129714
RNA-Seq Expression	Lsi11G013510
Synteny	Lsi11G013510
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-69

87.82

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Query:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV
        MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP  SS+R L+LALGGYKRLYMLCLRPV
Subjt:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV

Query:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKP
        LSRLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP
Subjt:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKP

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-71

87.42

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Query:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV
        MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSP  SS+R L+LALGGYKRLYMLCLRPV
Subjt:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV

Query:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
        LSRLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Subjt:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]

2.6e-61

78.75

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Query:  MQRNAEEEDNKQKKK--FKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVL
        MQRNA E++NK KKK  FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALARNDDSLWEHLC RH SSPPPS+LRS+VLALGGYKRLYMLCLRP+L
Subjt:  MQRNAEEEDNKQKKK--FKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVL

Query:  SRLN--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
        +  N  RS  + RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKP+NV
Subjt:  SRLN--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]

5.5e-72

88.05

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Query:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV
        MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPP SS+R L+LALGGYKRLYMLCLRPV
Subjt:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV

Query:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
        LSRLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Subjt:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]

3.6e-71

87.42

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Query:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV
        MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDDSLWEHLCF HVSSPP SS+R L+LALGGYKRLYMLCLRPV
Subjt:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV

Query:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
        LSRLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Subjt:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

TrEMBL top hits

e value

%identity

Alignment

A0A5N6RCK8 F-box domain-containing protein

3.8e-50

72.15

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Query:  MMQRNAEEEDNKQKKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLS
        M Q+ AEE++    KK KF INDH DILTEILKRLD PSL  AACVCRLWCA+ARN DSLWEHLCFRHV+SPPPSS+R +VLALGGYKRLYM+C+RPVL+
Subjt:  MMQRNAEEEDNKQKKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLS

Query:  RLNRSGLL-PRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
        RL  S L+  RVWT +D+VQ LSLSLFCVDYYER   LGG   A+A SL FLCKP+NV
Subjt:  RLNRSGLL-PRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

A0A6J1C339 F-box protein SNE-like

1.2e-61

78.75

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Query:  MQRNAEEEDNKQKKK--FKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVL
        MQRNA E++NK KKK  FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALARNDDSLWEHLC RH SSPPPS+LRS+VLALGGYKRLYMLCLRP+L
Subjt:  MQRNAEEEDNKQKKK--FKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVL

Query:  SRLN--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
        +  N  RS  + RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKP+NV
Subjt:  SRLN--RSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

A0A6J1GK18 F-box protein SNE-like

2.7e-72

88.05

Show/hide

Query:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV
        MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPP SS+R L+LALGGYKRLYMLCLRPV
Subjt:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV

Query:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
        LSRLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Subjt:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

A0A6J1HXD0 F-box protein SNE-like

1.7e-71

87.42

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Query:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV
        MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDDSLWEHLCF HVSSPP SS+R L+LALGGYKRLYMLCLRPV
Subjt:  MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPV

Query:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
        LSRLNRSGL+PRV TLQDQVQRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Subjt:  LSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

B9IAS1 F-box domain-containing protein

2.4e-49

68.39

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Query:  EDNKQKKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNR----
        EDN ++K+ KF INDH+DIL EILKRLD  SLC +ACVCRLWC +ARN DSLWEHLCFRHVS PP S +R +V+ALGGYKRLYM+C+RPVLSRL R    
Subjt:  EDNKQKKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNR----

Query:  --SGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV
          S  + RVWT +D+VQ LSLSLFCVDYYER G LGG   A+  SL FLCKP+NV
Subjt:  --SGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.5e-11

39.83

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Query:  DILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SLRSLVLALGGYKRLYMLCLRPVLSR-----LNRSGLLPRVWTLQDQV
        D++ E+L+R +A +L AAACV R W  LA  D+ LWE  C R  ++   S   LR++VL+LGG++RL+ + +RP+  R       +    P V   +DQV
Subjt:  DILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SLRSLVLALGGYKRLYMLCLRPVLSR-----LNRSGLLPRVWTLQDQV

Query:  QRLSLSLFCVDYYERNGC
        Q LSLSLF + +++   C
Subjt:  QRLSLSLFCVDYYERNGC

Q9LUB6 F-box protein SNE

3.0e-36

57.69

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Query:  EEEDNKQKKKFK---FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLN
        E+ +NK+++  +   FSINDH D+L EIL+RLD  SLC+AACVCRLW A+ARN DS+WE LCFR VS  P  SLRS+V ALGGY+ LY LC+RPVL+R  
Subjt:  EEEDNKQKKKFK---FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLN

Query:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYER--NGCLGGDAAAAAPSLRFLCKPLNV
            LP++   +DQ+Q LSLSL+CV YYER   G   GDA  +  SL FL KP+NV
Subjt:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYER--NGCLGGDAAAAAPSLRFLCKPLNV

Q9STX3 F-box protein GID2

2.5e-11

38.24

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Query:  NAEEEDNKQKK-----KFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSLRSLVLALGGYKRLYMLCLRP
        +A  E NK+ K     +  FS  D  +++ E+LK +DA +L  ++CV ++W   A+ D+ LWE +C RH ++     + LRS+VLALGG++RL+ L L P
Subjt:  NAEEEDNKQKK-----KFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSLRSLVLALGGYKRLYMLCLRP

Query:  VLSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYER
         LS+ N     PR    +D++ +L+LSL  + YYE+
Subjt:  VLSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYER

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.8e-12

38.24

Show/hide

Query:  NAEEEDNKQKK-----KFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSLRSLVLALGGYKRLYMLCLRP
        +A  E NK+ K     +  FS  D  +++ E+LK +DA +L  ++CV ++W   A+ D+ LWE +C RH ++     + LRS+VLALGG++RL+ L L P
Subjt:  NAEEEDNKQKK-----KFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSS--PPPSSLRSLVLALGGYKRLYMLCLRP

Query:  VLSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYER
         LS+ N     PR    +D++ +L+LSL  + YYE+
Subjt:  VLSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYER

AT5G48170.1 F-box family protein

2.1e-37

57.69

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Query:  EEEDNKQKKKFK---FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLN
        E+ +NK+++  +   FSINDH D+L EIL+RLD  SLC+AACVCRLW A+ARN DS+WE LCFR VS  P  SLRS+V ALGGY+ LY LC+RPVL+R  
Subjt:  EEEDNKQKKKFK---FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLN

Query:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYER--NGCLGGDAAAAAPSLRFLCKPLNV
            LP++   +DQ+Q LSLSL+CV YYER   G   GDA  +  SL FL KP+NV
Subjt:  RSGLLPRVWTLQDQVQRLSLSLFCVDYYER--NGCLGGDAAAAAPSLRFLCKPLNV

Sequences

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CDS sequence

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ATGATGCAGCGAAATGCAGAAGAAGAAGATAACAAACAGAAGAAGAAATTCAAATTCTCAATCAACGATCACCTCGATATTCTCACCGAAATCCTCAAGCGACTCGACGC
TCCTTCTCTCTGCGCTGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCTCTCTGGGAGCATCTCTGTTTCCGTCATGTCTCTTCTCCGCCGC
CTTCCTCCCTTCGCTCTCTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTATATGCTCTGTCTCCGTCCTGTTCTCTCTCGATTGAATCGCTCCGGTTTGCTCCCCCGC
GTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCATTGTTCTGTGTCGATTATTATGAGAGAAATGGTTGCCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTC
GCTGCGCTTCCTCTGCAAACCGCTGAACGTATAA

mRNA sequence

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Protein sequence

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MMQRNAEEEDNKQKKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPR
VWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

Lsi11G013510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome