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Lsi11G013840 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G013840
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich protein-like
Genome locationchr11:22405826..22406697
RNA-Seq ExpressionLsi11G013840
SyntenyLsi11G013840
Gene Ontology termsNA
InterPro domainsIPR010800 - Glycine rich protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572253.1 Glycine-rich protein, partial [Cucurbita argyrosperma subsp. sororia]4.3e-3780.16Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGY--------GGGH
        MSSK FIF+GLL A VLL SSEV ARDLAETS++KENEAT E NGVEDAKYGGYD GY GGRGGYG GGYGGRGGYGGRGGYGGRGGY        GGG+
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGY--------GGGH

Query:  GGGCRYGRCGHRCCNYAGEVVEGAKP
        G GCRYGRCG+RCC+YAGEVVEGAKP
Subjt:  GGGCRYGRCGHRCCNYAGEVVEGAKP

KAG7011884.1 Glycine-rich protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-3680Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGY--------GGGH
        MSSK FIF+GLL A VLL SSEV ARDLAETS++KENEAT E NGVEDAKYGGYD GY GGRGGYG GGYGGRGGYGGRGGYGGRGGY        GGG+
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGY--------GGGH

Query:  GGGCRYGRCGHRCCNYAGEVVEGAK
        G GCRYGRCG+RCC+YAGEVVEGAK
Subjt:  GGGCRYGRCGHRCCNYAGEVVEGAK

XP_022952570.1 cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata]8.8e-3884.17Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGY--GGGHGGGCRY
        MSSK FIF+GLL A VLL SSEV ARDLAETS++KENEAT E NGVEDAKYGGYD GY GGRGGYG GGYGGRGGYGGRGGYGGRGGY  GGG+G GCRY
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGY--GGGHGGGCRY

Query:  GRCGHRCCNYAGEVVEGAKP
        GRCG+RCC+YAGEVVEGAKP
Subjt:  GRCGHRCCNYAGEVVEGAKP

XP_022969295.1 glycine-rich protein-like [Cucurbita maxima]1.3e-3683.47Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGY-GHGGYGGRGGYGGRGGYGGRGGYG--GGHGGGCR
        MSSK FIF+GLL AF+LL SSEV ARDLAETS+ KE EATVE NGVEDAKYGGYD GY GGRGGY G GGYGGRGGYGGRGGYGGRGGYG  GG+G GCR
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGY-GHGGYGGRGGYGGRGGYGGRGGYG--GGHGGGCR

Query:  YGRCGHRCCNYAGEVVEGAKP
        YGRCG+RCC+YAGEVVEGAKP
Subjt:  YGRCGHRCCNYAGEVVEGAKP

XP_038886927.1 cold and drought-regulated protein CORA-like isoform X2 [Benincasa hispida]1.7e-3680.67Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY-GGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGGGCRYG
        MSSK F+F+GLLLAFVLL SSEV ARDLAETSS+K+NE TVE NGVEDAKY GGYDRGYGGGRGGYGHGGY       G GGYGGRGGYGGG+  GCRYG
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY-GGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGGGCRYG

Query:  RCGHRCCNYAGEVVEGAKP
        RCG+RCC+YAGEVVEGAKP
Subjt:  RCGHRCCNYAGEVVEGAKP

TrEMBL top hitse value%identityAlignment
A0A1S3C180 cold and drought-regulated protein CORA-like2.2e-3481.97Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY-GGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GC
        MSSK F+F+GLLLAFVLL SSEV ARDLAET S+ +NEATVE NGVEDAKY GGYDRGYGG  GGYG GGY GRGGY GRGGYGGRGGYGGG GG   GC
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY-GGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GC

Query:  RYGRCGHRCCNYAGEVVEGAKP
        RYGRCG+RCC+YAGEVVEGAKP
Subjt:  RYGRCGHRCCNYAGEVVEGAKP

A0A5D3DE59 Cold and drought-regulated protein CORA-like4.4e-3582.79Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY-GGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GC
        MSSK F+F+GLLLAFVLL SSEV ARDLAETSS+ +NEATVE NGVEDAKY GGYDRGYGG  GGYG GGY GRGGY GRGGYGGRGGYGGG GG   GC
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKY-GGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGG---GC

Query:  RYGRCGHRCCNYAGEVVEGAKP
        RYGRCG+RCC+YAGEVVEGAKP
Subjt:  RYGRCGHRCCNYAGEVVEGAKP

A0A6J1GKL6 glycine-rich protein-like isoform X25.4e-3377.97Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGGGCRYGR
        MSSK FIF+GLL A VLL SSEV ARDLAETS++KENEAT E NGVEDAKYGGYD GYG      G GGYGGRGGYGGRGGYGG    GGG+G GCRYGR
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGGGCRYGR

Query:  CGHRCCNYAGEVVEGAKP
        CG+RCC+YAGEVVEGAKP
Subjt:  CGHRCCNYAGEVVEGAKP

A0A6J1GM55 cold and drought-regulated protein CORA-like isoform X14.2e-3884.17Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGY--GGGHGGGCRY
        MSSK FIF+GLL A VLL SSEV ARDLAETS++KENEAT E NGVEDAKYGGYD GY GGRGGYG GGYGGRGGYGGRGGYGGRGGY  GGG+G GCRY
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGY--GGGHGGGCRY

Query:  GRCGHRCCNYAGEVVEGAKP
        GRCG+RCC+YAGEVVEGAKP
Subjt:  GRCGHRCCNYAGEVVEGAKP

A0A6J1HZJ5 glycine-rich protein-like6.1e-3783.47Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGY-GHGGYGGRGGYGGRGGYGGRGGYG--GGHGGGCR
        MSSK FIF+GLL AF+LL SSEV ARDLAETS+ KE EATVE NGVEDAKYGGYD GY GGRGGY G GGYGGRGGYGGRGGYGGRGGYG  GG+G GCR
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGY-GHGGYGGRGGYGGRGGYGGRGGYG--GGHGGGCR

Query:  YGRCGHRCCNYAGEVVEGAKP
        YGRCG+RCC+YAGEVVEGAKP
Subjt:  YGRCGHRCCNYAGEVVEGAKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G05540.1 Glycine-rich protein family1.2e-0848.48Show/hide
Query:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGR--GGYGGR--------GGYGGR-GGYG
        M+SK  +F+ L++  VLL +SEVVARDLAE S+E++N    E+   E  ++GG+    GGG GG+  GGYGG   GGYG R        GGYG R GGYG
Subjt:  MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGR--GGYGGR--------GGYGGR-GGYG

Query:  GGHGGGCRYGRC--GH-----RCCNYAGEVVE
           GG CRYG C  G+     RCC YAG+ V+
Subjt:  GGHGGGCRYGRC--GH-----RCCNYAGEVVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCAAAGTTTTTATTTTCGTCGGTCTTCTTCTCGCCTTTGTTCTCCTCTTCTCTTCGGAGGTGGTTGCGAGAGACCTCGCAGAGACCTCCTCCGAGAAGGAAAA
CGAGGCTACGGTGGAAATCAATGGCGTAGAGGATGCCAAGTATGGAGGGTACGACAGAGGCTATGGCGGTGGTCGTGGTGGTTACGGTCATGGTGGCTATGGTGGTCGCG
GTGGTTACGGTGGTCGTGGTGGCTATGGCGGCCGAGGTGGTTACGGTGGCGGCCACGGAGGGGGTTGCCGGTATGGTAGGTGCGGGCACAGGTGCTGCAACTACGCCGGT
GAAGTGGTAGAGGGCGCAAAACCTTAA
mRNA sequenceShow/hide mRNA sequence
GTCAGTCTTAATTGCCATTCTCTCATTTCTCATCTCTCTTGCTCTTTATGTACCTATAAATACATCTACAAGGATACAAATTTTTCTCATCCCATCTCCAAAAATCAATC
TTTCTTACTAAACAAACAAAATGAGTTCCAAAGTTTTTATTTTCGTCGGTCTTCTTCTCGCCTTTGTTCTCCTCTTCTCTTCGGAGGTGGTTGCGAGAGACCTCGCAGAG
ACCTCCTCCGAGAAGGAAAACGAGGCTACGGTGGAAATCAATGGCGTAGAGGATGCCAAGTATGGAGGGTACGACAGAGGCTATGGCGGTGGTCGTGGTGGTTACGGTCA
TGGTGGCTATGGTGGTCGCGGTGGTTACGGTGGTCGTGGTGGCTATGGCGGCCGAGGTGGTTACGGTGGCGGCCACGGAGGGGGTTGCCGGTATGGTAGGTGCGGGCACA
GGTGCTGCAACTACGCCGGTGAAGTGGTAGAGGGCGCAAAACCTTAAGACAAGGTGTGGAATGGGGTGAAATAATAAAATAGTTTGAATTTTATGTGTTTGGTTAAATGT
GTGAACTGTGAAGCTTGAGAAATAAATACATGGGGAATGGAGTGGCTAGCTTCTAGTTTCTCTTTTTTCCCTATGTTTGGGTTTTAGTATGTTGCTATAGATTTGCTTTT
GCAAATTTTTATAATATCAACAAAGATATTTTCACTTTTGGGTGATCGTATTTCCTATTTCGAT
Protein sequenceShow/hide protein sequence
MSSKVFIFVGLLLAFVLLFSSEVVARDLAETSSEKENEATVEINGVEDAKYGGYDRGYGGGRGGYGHGGYGGRGGYGGRGGYGGRGGYGGGHGGGCRYGRCGHRCCNYAG
EVVEGAKP