; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G013920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G013920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationchr11:22472129..22474078
RNA-Seq ExpressionLsi11G013920
SyntenyLsi11G013920
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589134.1 hypothetical protein SDJN03_17699, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6290.34Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAE A+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]9.9e-6593.79Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]3.4e-6594.48Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

XP_022136009.1 uncharacterized protein At4g28440-like [Momordica charantia]7.1e-6391.03Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.2e-6595.17Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein4.8e-6593.79Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284401.6e-6594.48Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein1.6e-6594.48Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVEVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like3.4e-6391.03Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAE ANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like5.9e-6390.34Show/hide
Query:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI
        MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQ      GNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAE A+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284402.1e-4166.17Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRLA
        KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GDETG I+FTARNDQ      G TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNV
        VDKWGR+E   AA+F VKEDNNLSLVEYEL+NV
Subjt:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein3.8e-3864.71Show/hide
Query:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQ      G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EAANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVEVA E  +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EAANFEVKEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein3.8e-3864.71Show/hide
Query:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRL
        A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVGDETG I+FTARNDQ      G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEVA-EAANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVEVA E  +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEVA-EAANFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein1.2e-3965.67Show/hide
Query:  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRLAV
        +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDETG IVFTARNDQ      G+TVTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRLAV

Query:  DKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        DKWGRVEV E A+F+VKED N+SL+EYELVNV E
Subjt:  DKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein3.7e-4168.89Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRLA
        K+KPVFVKV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RISECLVGDET  I+FTARNDQ      G TV LRNAKIDMFKGSMRLA
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE
        VDKWGR+E  E A+  VKEDNNLSLVEYELVNV E
Subjt:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein1.5e-4266.17Show/hide
Query:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRLA
        KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GDETG I+FTARNDQ      G TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQ------GNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNV
        VDKWGR+E   AA+F VKEDNNLSLVEYEL+NV
Subjt:  VDKWGRVEVAEAANFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACACCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACAAGCGGCCACACTCTCACGGTCAAGGTCGTGAG
TTCCAAAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCCCGTCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAACGACCAAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGTTCAATGAGGTTAGCAGTAGATAAATGGGGACGA
GTTGAAGTTGCCGAAGCAGCCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA
mRNA sequenceShow/hide mRNA sequence
GCAAAAGATGAGCCCGTATTCTAAAACCCAATGTCAAAAAATCCCAAATGTGAGTGCAACGCGAAATTAAATTCTTAGGGTTAGGGTTTTGACCCTCAGGTTCGATTTCA
TTCTTCATTTTCACGTTGCACTTTCATCGGCAACAGGGTTTCCTTCCGATACTTTGGATTTTCATGGCGACACCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTT
CGTAAAAGTAGAAGAGCTTAAGCCTGGTACAAGCGGCCACACTCTCACGGTCAAGGTCGTGAGTTCCAAAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGC
TTACGGCCCGTCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGGAAACACTGTGACCCTG
CGGAATGCAAAGATTGACATGTTCAAAGGTTCAATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTTGCCGAAGCAGCCAACTTTGAGGTTAAAGAGGACAACAA
TCTGTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA
Protein sequenceShow/hide protein sequence
MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQGNTVTLRNAKIDMFKGSMRLAVDKWGR
VEVAEAANFEVKEDNNLSLVEYELVNVEE