; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G014850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G014850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBeta-amylase
Genome locationchr11:23355819..23359797
RNA-Seq ExpressionLsi11G014850
SyntenyLsi11G014850
Gene Ontology termsGO:0000272 - polysaccharide catabolic process (biological process)
GO:0016161 - beta-amylase activity (molecular function)
GO:0102229 - amylopectin maltohydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022884.1 Beta-amylase [Cucurbita argyrosperma subsp. argyrosperma]2.4e-2275Show/hide
Query:  SDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        S+TIM SVVCQ+HSGIIE I PC GYVQG  KCK Q KKL+LNWSLPCWSIA RIN R SAYE TTIEP+ +
Subjt:  SDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

XP_008455397.1 PREDICTED: beta-amylase-like isoform X1 [Cucumis melo]2.4e-2279.45Show/hide
Query:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        ASDTIMAS VCQVHSGII++IA    + QG+VKCKVQVK LKLNWSLPCWS APRINLRT AYEMTTIEP+V+
Subjt:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

XP_023531442.1 beta-amylase-like isoform X1 [Cucurbita pepo subsp. pepo]1.4e-2273.97Show/hide
Query:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        AS+TIM SVVCQ+HSGIIE+I PC GYVQG  KCKVQ KKL+LNWSLPCWS A RIN R SA+E TTIEP+ +
Subjt:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

XP_023531443.1 beta-amylase-like isoform X2 [Cucurbita pepo subsp. pepo]1.4e-2273.97Show/hide
Query:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        AS+TIM SVVCQ+HSGIIE+I PC GYVQG  KCKVQ KKL+LNWSLPCWS A RIN R SA+E TTIEP+ +
Subjt:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

XP_038887373.1 beta-amylase isoform X1 [Benincasa hispida]2.6e-2987.67Show/hide
Query:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        ASDTIMASVVCQVHSG+IE+ APCRGYVQGEVKCKVQVKKLKLNWSLPCWSI PRIN+RT AYEMT IEP+V+
Subjt:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

TrEMBL top hitse value%identityAlignment
A0A1S3C222 Beta-amylase1.1e-2279.45Show/hide
Query:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        ASDTIMAS VCQVHSGII++IA    + QG+VKCKVQVK LKLNWSLPCWS APRINLRT AYEMTTIEP+V+
Subjt:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

A0A5A7TFD9 Beta-amylase1.5e-2279.45Show/hide
Query:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        ASDTIMAS VCQVHSGII++IA    + QG+VKCKVQVK LKLNWSLPCWS APRINLRT AYEMTTIEP+V+
Subjt:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

A0A6J1C678 Beta-amylase4.1e-2064.29Show/hide
Query:  MASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVTMFRDVHLSSIIYSEAV
        M SVVCQ+HSGIIE+IAPC  YVQG+VK KVQ+KK +LNWSLPC S+A R NLRT+AYE T+IEP+ T  RDV  S   Y + +
Subjt:  MASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVTMFRDVHLSSIIYSEAV

A0A6J1ESN0 Beta-amylase1.5e-2275Show/hide
Query:  SDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        S+TIM SVVCQ+HSGIIE I PC GYVQG  KCKVQ KKL+LNWSLPCWSIA RIN R SAYE TT EP+ +
Subjt:  SDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

A0A6J1JI22 Beta-amylase1.9e-2272.6Show/hide
Query:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT
        AS+TIM SVVCQ+HSGIIE+I PC GYVQG  KCK Q KKL+LNWSLPCWSIA RIN R SA++ TTIEP+ +
Subjt:  ASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGAGGCGAGGAGATAGAGAAGTATGGGGGTGAGCATCGGTCGGTTCTTGTTGGTTTTGGGATGTCTGGGACATCGAAGGAAACGGCTTCAGATACAATCATGGC
TAGTGTTGTGTGCCAAGTTCACAGTGGAATAATAGAGAAAATAGCACCATGCAGAGGATATGTTCAAGGGGAAGTTAAATGTAAGGTGCAAGTAAAGAAGCTAAAACTCA
ACTGGTCTCTCCCATGTTGGTCTATAGCACCAAGGATCAATCTTCGGACTTCGGCATATGAGATGACTACAATCGAACCAAAGGTAACTATGTTTAGGGATGTACATCTT
TCTTCTATCATATATTCTGAAGCTGTGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGAGGCGAGGAGATAGAGAAGTATGGGGGTGAGCATCGGTCGGTTCTTGTTGGTTTTGGGATGTCTGGGACATCGAAGGAAACGGCTTCAGATACAATCATGGC
TAGTGTTGTGTGCCAAGTTCACAGTGGAATAATAGAGAAAATAGCACCATGCAGAGGATATGTTCAAGGGGAAGTTAAATGTAAGGTGCAAGTAAAGAAGCTAAAACTCA
ACTGGTCTCTCCCATGTTGGTCTATAGCACCAAGGATCAATCTTCGGACTTCGGCATATGAGATGACTACAATCGAACCAAAGGTAACTATGTTTAGGGATGTACATCTT
TCTTCTATCATATATTCTGAAGCTGTGACATAG
Protein sequenceShow/hide protein sequence
MRGGEEIEKYGGEHRSVLVGFGMSGTSKETASDTIMASVVCQVHSGIIEKIAPCRGYVQGEVKCKVQVKKLKLNWSLPCWSIAPRINLRTSAYEMTTIEPKVTMFRDVHL
SSIIYSEAVT