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Lsi11G014880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G014880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr11:23370914..23372705
RNA-Seq ExpressionLsi11G014880
SyntenyLsi11G014880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031624.1 uncharacterized protein E6C27_scaffold139G003920 [Cucumis melo var. makuwa]7.7e-2670.59Show/hide
Query:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDN
        MS  SKF SCWR AAVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHWRP L AI+ED +GA+S   KS +KKPEKKTSGR GR MTKS   Y GRD+
Subjt:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDN

Query:  YW
        YW
Subjt:  YW

XP_008455392.1 PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo]1.3e-3371.67Show/hide
Query:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDN
        MS  SKF SCWR AAVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHW+P L AI+ED KGA+S   KS +KKPEKKTSGR GR MTKS   Y GRD+
Subjt:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDN

Query:  YWTNTMAMAMSPFSPVPSMF
        YW N+MAMAM  FSPVPSMF
Subjt:  YWTNTMAMAMSPFSPVPSMF

XP_022136180.1 uncharacterized protein LOC111007936 [Momordica charantia]4.0e-2253.54Show/hide
Query:  MSLLSKFGSCWR-PAAVAPRVYLDGAVAEE------VKEQSVEILRSSKSESAAHWRPTLAAILEDSKGA---RSPVNKSGKKKPEKKTSGRLGRLMTKS
        M   S+FGSC R PA VAPR+Y D A A+E      V+EQ V  +R SKS  AAHWRP L+AILED+  A   +  VNKSG++K EKK SGR  R + KS
Subjt:  MSLLSKFGSCWR-PAAVAPRVYLDGAVAEE------VKEQSVEILRSSKSESAAHWRPTLAAILEDSKGA---RSPVNKSGKKKPEKKTSGRLGRLMTKS

Query:  SNYRGRDNYWTNTMAMAMSPFSPVPSM
         +Y GRD+YWTN+  +AM   SP P M
Subjt:  SNYRGRDNYWTNTMAMAMSPFSPVPSM

XP_031745001.1 uncharacterized protein LOC116405215 [Cucumis sativus]3.3e-2968.07Show/hide
Query:  SLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDNY
        S +SKFGSCWR AAVAP      AV +EVK EQ V   RSSKSESAAHWRP LAAI+EDS GA     KS K+K EKKTSG  G   TKS   Y GRDNY
Subjt:  SLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDNY

Query:  WTNTMAMAMSPFSPVPSMF
        WTNTMAMAM  FSPVPSMF
Subjt:  WTNTMAMAMSPFSPVPSMF

XP_038888636.1 uncharacterized protein LOC120078432 [Benincasa hispida]2.2e-4179.66Show/hide
Query:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVKEQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKSSNYRGRDNYW
        MS  SKF SCWR A VAPRVYLDGAVAEEVKEQSV  LRSSKSESAAHWRP LA ILEDSKG RSPV KSGKKKPEKK SGR  RL+TKS +  GRDNYW
Subjt:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVKEQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKSSNYRGRDNYW

Query:  TNTMAMAMSPFSPVPSMF
        TN++AMAM  FSPVP MF
Subjt:  TNTMAMAMSPFSPVPSMF

TrEMBL top hitse value%identityAlignment
A0A0A0K279 Uncharacterized protein2.3e-2064.36Show/hide
Query:  SLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDNY
        S +SKFGSCWR AAVAP      AV +EVK EQ V   RSSKSESAAHWRP LAAI+EDS GA     KS K+K EKKTSG  G   TKS   Y GRDNY
Subjt:  SLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDNY

Query:  W
        W
Subjt:  W

A0A1S3C217 uncharacterized protein LOC1034955646.3e-3471.67Show/hide
Query:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDN
        MS  SKF SCWR AAVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHW+P L AI+ED KGA+S   KS +KKPEKKTSGR GR MTKS   Y GRD+
Subjt:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDN

Query:  YWTNTMAMAMSPFSPVPSMF
        YW N+MAMAM  FSPVPSMF
Subjt:  YWTNTMAMAMSPFSPVPSMF

A0A5D3C9U7 Uncharacterized protein3.7e-2670.59Show/hide
Query:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDN
        MS  SKF SCWR AAVAPRVYL  AV+EEVK EQSV   RSSKS+SAAHWRP L AI+ED +GA+S   KS +KKPEKKTSGR GR MTKS   Y GRD+
Subjt:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVK-EQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKS-SNYRGRDN

Query:  YW
        YW
Subjt:  YW

A0A6J1C360 uncharacterized protein LOC1110079361.9e-2253.54Show/hide
Query:  MSLLSKFGSCWR-PAAVAPRVYLDGAVAEE------VKEQSVEILRSSKSESAAHWRPTLAAILEDSKGA---RSPVNKSGKKKPEKKTSGRLGRLMTKS
        M   S+FGSC R PA VAPR+Y D A A+E      V+EQ V  +R SKS  AAHWRP L+AILED+  A   +  VNKSG++K EKK SGR  R + KS
Subjt:  MSLLSKFGSCWR-PAAVAPRVYLDGAVAEE------VKEQSVEILRSSKSESAAHWRPTLAAILEDSKGA---RSPVNKSGKKKPEKKTSGRLGRLMTKS

Query:  SNYRGRDNYWTNTMAMAMSPFSPVPSM
         +Y GRD+YWTN+  +AM   SP P M
Subjt:  SNYRGRDNYWTNTMAMAMSPFSPVPSM

A0A6J1GKL7 uncharacterized protein LOC1114551752.7e-1653.39Show/hide
Query:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVKEQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKSSNYRGRDNYW
        M L SK GS  R A  A RVY         +EQS+E + SSKSESA+HWRP L  ILEDSKGAR PV KSG+K   KKTS R  R +TKS    GRD YW
Subjt:  MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVKEQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKSSNYRGRDNYW

Query:  TNTMAMAMSPFSPVPSMF
         ++  +A   F+P P MF
Subjt:  TNTMAMAMSPFSPVPSMF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTGCTTTCAAAGTTCGGTTCTTGTTGGCGGCCGGCGGCGGTGGCGCCGCGGGTCTACCTGGACGGCGCTGTAGCAGAGGAGGTCAAGGAGCAGAGCGTCGAGAT
ACTGAGGAGTTCGAAGTCGGAATCTGCAGCGCATTGGCGGCCGACGCTGGCTGCTATATTGGAGGATAGTAAAGGGGCTCGATCGCCGGTGAATAAATCCGGCAAAAAGA
AGCCGGAGAAGAAAACGTCCGGCCGGCTAGGCAGGCTTATGACCAAGTCGTCTAATTATCGTGGCAGAGATAATTACTGGACGAACACAATGGCAATGGCAATGTCGCCG
TTTTCGCCAGTGCCGTCCATGTTTTGA
mRNA sequenceShow/hide mRNA sequence
TTTGTCGCGAATATGTCATTGCTTTCAAAGTTCGGTTCTTGTTGGCGGCCGGCGGCGGTGGCGCCGCGGGTCTACCTGGACGGCGCTGTAGCAGAGGAGGTCAAGGAGCA
GAGCGTCGAGATACTGAGGAGTTCGAAGTCGGAATCTGCAGCGCATTGGCGGCCGACGCTGGCTGCTATATTGGAGGATAGTAAAGGGGCTCGATCGCCGGTGAATAAAT
CCGGCAAAAAGAAGCCGGAGAAGAAAACGTCCGGCCGGCTAGGCAGGCTTATGACCAAGTCGTCTAATTATCGTGGCAGAGATAATTACTGGACGAACACAATGGCAATG
GCAATGTCGCCGTTTTCGCCAGTGCCGTCCATGTTTTGAAGGTAAATTTTGATGATCGTAAAATATCATATACAGTTGGTTGTCAAAGGAGAAATTAAAACGAGATAGAA
GCCGTCGCCGAAAATGACGTTTCTGTTACTCCCACCGTCGTACAGTTCAGATTCAGGCCAAAATCTCGCTGGTGTTTTAGTAACAAATTAATACAAATATCAATTTAATG
AAATCAACAAAAGAAAAGAAAAAAGAAAAAAGAAAAAATTAGTATGTAGTGTACCGTGATAGACTTATTATCTCCTCTTCAAACGACATGTAGGTTTTCTCTTTTGTTTT
GCCGTGCAGTGTGCACACCTTGTGGATATGAACAAAAATATAAAATGAATTTTTGTTTAATATATGTGTTCAATTGTCTTGTATCTACTTTTAATTTTATGAAAAATCTT
TAAATATCGACTACTATGAATTGAA
Protein sequenceShow/hide protein sequence
MSLLSKFGSCWRPAAVAPRVYLDGAVAEEVKEQSVEILRSSKSESAAHWRPTLAAILEDSKGARSPVNKSGKKKPEKKTSGRLGRLMTKSSNYRGRDNYWTNTMAMAMSP
FSPVPSMF