CuGenDBv2

Gene ID	Lsi11G015360
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic
Genome location	chr11:23698892..23699401
RNA-Seq Expression	Lsi11G015360
Synteny	Lsi11G015360
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572353.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.1e-73

89.02

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTV----RRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAA
        MASPTLITP TSKSQ   IPLKPKS+I+AAATTTT     RRREFLSLTASVLAPSW LFP +PALASSD+EYVKDT+EVIGKVRTTITMD+NDPNVAAA
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTV----RRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAA

Query:  VAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  VAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_004136817.1 photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus]

3.9e-79

95.27

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQSPFIPLKPKSTISAA TT TVRRREFLSLTASVLAPS+ LFPQSPALA+SDDEYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_008455335.1 PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Cucumis melo]

5.0e-79

94.67

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQSPFIPLKPKSTISAA TT TVRRR+FLSL+ASVLAPS+ LFPQSPALA+SDDEYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

2.4e-73

90.12

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTT---VRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKS+ISAAATTTT    RRREFLSLTASVLAPSW LFP +PALASSD+EYVKDT+EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTT---VRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAV

Query:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_038887363.1 photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]

1.6e-80

96.45

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQ+PFIPLKPKSTISAAAT TTVRRR+FLSLTASVLAPSW LFPQSPALASSDDEYVKDTSEVIGKVR TITMDRNDPNVAAAVAEL
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

1.9e-79

95.27

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQSPFIPLKPKSTISAA TT TVRRREFLSLTASVLAPS+ LFPQSPALA+SDDEYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A1S3C1X2 photosystem II repair protein PSB27-H1, chloroplastic

2.4e-79

94.67

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQSPFIPLKPKSTISAA TT TVRRR+FLSL+ASVLAPS+ LFPQSPALA+SDDEYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A5A7SR30 Photosystem II repair protein PSB27-H1

2.4e-79

94.67

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL
        MASPTLITPCTSKSQSPFIPLKPKSTISAA TT TVRRR+FLSL+ASVLAPS+ LFPQSPALA+SDDEYVKDT+EVIGKVRTTITMDRNDPNVAAAVA+L
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAEL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

1.2e-73

90.12

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTT---VRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKS+ISAAATTTT    RRREFLSLTASVLAPSW LFP +PALASSD+EYVKDT+EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTT---VRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAV

Query:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

1.2e-73

90.12

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Query:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTT---VRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAV
        MASPTLITP TSKSQ   IPLKPKS+ISAAATTTT    RRREFLSLTASVLAPSW LFP +PALASSD+EYVKDT+EVIGKVRTTITMD+NDPNVAAAV
Subjt:  MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTT---VRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAV

Query:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

2.4e-47

73.13

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Query:  RREFLSL--TASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSG
        RR+FLSL  T+++L  S      +P  A+ D+EY+KDTS VI KVR+T++M + DPNVA AVAELRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSG
Subjt:  RREFLSL--TASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSG

Query:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        HY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.1e-04

24.49

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Query:  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  + +++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

1.7e-48

73.13

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Query:  RREFLSL--TASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSG
        RR+FLSL  T+++L  S      +P  A+ D+EY+KDTS VI KVR+T++M + DPNVA AVAELRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSG
Subjt:  RREFLSL--TASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSG

Query:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        HY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  HYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

7.9e-06

24.49

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Query:  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        Y+K   EV+  +R ++  + +++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  YVKDTSEVIGKVRTTITMD-RNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Sequences

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CDS sequence

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ATGGCCTCTCCAACACTCATAACTCCCTGTACTTCCAAATCTCAGAGCCCCTTCATCCCCCTCAAACCCAAATCCACCATTTCCGCCGCCGCAACAACCACCACTGTCCG
CCGCCGCGAGTTCCTTTCTTTGACGGCCTCTGTTCTAGCGCCGTCGTGGGCTCTGTTCCCTCAATCGCCGGCACTGGCGTCTTCGGACGACGAGTACGTGAAGGACACAA
GCGAGGTGATAGGGAAGGTGAGAACGACGATCACAATGGACCGAAATGACCCAAATGTGGCAGCGGCGGTGGCGGAGCTTCGAGAAAGTTCTAATTCTTGGGTGGCTAAG
TACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCATTGAATGCGGTGTCGGGGCATTATATTAGCTTTGGTCCGACAGCGCCGATTCC
AGCGAAGAGGAAGGCAAGGATTTTGGAAGAGATGGACACTGCGGAGAAAGCTCTGTTAAGAGGGAGATGA

mRNA sequence

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Protein sequence

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MASPTLITPCTSKSQSPFIPLKPKSTISAAATTTTVRRREFLSLTASVLAPSWALFPQSPALASSDDEYVKDTSEVIGKVRTTITMDRNDPNVAAAVAELRESSNSWVAK
YRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Lsi11G015360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome