CuGenDBv2

Gene ID	Lsi11G015530
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mediator of RNA polymerase II transcription subunit 11
Genome location	chr11:23860187..23864064
RNA-Seq Expression	Lsi11G015530
Synteny	Lsi11G015530
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0016592 - mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019404 - Mediator complex, subunit Med11

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]

1.9e-28

64.71

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPP QNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LDGMKQTID+Y QVKMEDS
Subjt:  LDGMKQTIDEYHQVKMEDS

XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]

2.1e-27

63.87

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LDGMKQTIDEY QVK+ED+
Subjt:  LDGMKQTIDEYHQVKMEDS

XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]

3.3e-28

65.55

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LDGMKQTIDEY QVKMEDS
Subjt:  LDGMKQTIDEYHQVKMEDS

XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]

7.3e-28

64.71

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LDGMKQTIDEY QVKMED+
Subjt:  LDGMKQTIDEYHQVKMEDS

XP_038894867.1 mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida]

1.6e-27

64.71

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MD PTQNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LD MKQTIDEY QVKMEDS
Subjt:  LDGMKQTIDEYHQVKMEDS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 11

9.3e-29

64.71

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPP QNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LDGMKQTID+Y QVKMEDS
Subjt:  LDGMKQTIDEYHQVKMEDS

A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 11

1.0e-27

63.87

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LDGMKQTIDEY QVK+ED+
Subjt:  LDGMKQTIDEYHQVKMEDS

A0A6J1EPI6 Mediator of RNA polymerase II transcription subunit 11

1.3e-25

98.41

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Query:  KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYHQVKMEDS
        KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY QVKMEDS
Subjt:  KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYHQVKMEDS

A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 11

1.6e-28

65.55

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LDGMKQTIDEY QVKMEDS
Subjt:  LDGMKQTIDEYHQVKMEDS

A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 11

8.7e-27

63.03

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE                                       KDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI K
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEYHQVKMEDS
        LDGMKQTIDEY QVKMED+
Subjt:  LDGMKQTIDEYHQVKMEDS

SwissProt top hits

e value

%identity

Alignment

Q6ID77 Mediator of RNA polymerase II transcription subunit 11

5.2e-21

49.55

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE                                       KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Arabidopsis top hits

e value

%identity

Alignment

AT3G01435.1 Expressed protein

3.7e-22

49.55

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Query:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE                                       KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPPTQNTSLQRLQNVE---------------------------------------KDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDEY
        L+ +KQT D Y
Subjt:  LDGMKQTIDEY

Sequences

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CDS sequence

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ATGGATCCACCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATT
TGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAATTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGAATATCATC
AAGTGAAAATGGAAGATTCTTGA

mRNA sequence

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CCTAACTCAATATTACTATATAAATTAGAGAATTTTAAATCTCATTTATTTTAGGTCATTGATTATTTAGGGGCAATGATATTGGATGATATAAATTAAATTTGCATTAA
TCCACTAACTTAAGCCAGACTTAATTGACTATTTATGAAAGGAGTGAATTCACACAAAAATCTCGTAAATAACCTCTCTCTCAGTCATCATCACATGCCGTCGGTCTCTC
CTCACCAGTCACCACCGTTGGCGCCGTCGCCATTCCCTCTCTCTTAGTTGCTGGTCGCCCTTTGCCGGTCGCTGTTAAACAGATCTGACTTCAAAGCGAAATCCACTTCC
TCCATCTGCTCTGGATTCAGAGAAATCGAATTTGAATCGAGGACGCAATGGAACTTCAGGAGCTGTTCTTCCTCACTTCGAATCTTCAGAGAGCTCGAGGTCTTCGTTTC
AAGATCTGGGGTTTCTCTATTTTTGTTCTGAGTTGTTCTTGGGAGAGTATGAGTTGATTCTACTTTGATTGAGATTTCTACTGAGATGCTTCTTGTCAGTAGGGTTCCTG
ATTACTGCTCTACTGTTGCTGAGTCTTTGAATCTTGTACATCTTGATTTTTCTTTACAAATGGGGGTTTTACTTCAAAACAGCTTGCAGAGGAAGTAGCCATTTTCAGTT
TAGCCAAAGCTAATAGGATCAGGATGGAACTTTCTTCCTTTAAATCCATTCATACTCAATTCAGAAGTAAGAGAGACTGGTCTTAGGAGTTTGAGGAGGAGGAGAGGATT
GAATAGCAGATGCAGTAGAGTTGGTATTGGAGAATTCAGAGACAATTGGTAAGGTTGTAATAATGGAGTTTGAGGGATGAATTGAACAAAACATGATGTGATATGAACAT
TTTGCCAGGTTTGTTAAGACGTTTGTAGCCTTTATGCACAGAACTATAGCCGCCAGAAATTTACAGTGGGAGGATCGAAGTTGGAATTTACGTTGATTGAGAGGTCTGAG
ATAAGACAAACGTTGACAGCCAACGACTCAAAATGAATTATAGTTCGGTTTGGTTGGGTTTCAATTATAATTTAGATATTTGAATTCATCTGATTAGGAAATGCCTCCAG
TAATGGAAATTTGAATTATAATTCATTATTTCAATAATTTAAAGGTTAACTGATATGCGAAAACATTCAAAGAATGTTGTTTTTATGTAAATAATTTCATTTTGGGTGTC
AATGGCTTAAGTTTTATAAATTGAGATGTTAACAGTTATTAGGACTCTACTTTAGCTTTATTTACTTATTTTTCAAATTTTAATTTTGTTCACAGAATAGTTTGTTTAAA
TTCCTTCATTGCTGTGTGATTTATCACAGCCAGCACAGCTCTTGATGGATCCACCGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGGATATCCAAGTT
ACGTTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAATTGGAATATATGAT
TTCGAAGTTGGATGGAATGAAACAAACTATTGATGAATATCATCAAGTGAAAATGGAAGATTCTTGAGGCACGTCCCTAGTGAGTTGCTAATCTAACTCTCTCCCATTTT
TCCCATAGGGGTTGTCAAAACCAAAGGTTGAAGGGAAACTTCAGTCATATATATGTATATGATATATCTATCTCTATATATATATATATATTCGTGAGTGTCCAGACCAG
CTGATGCGCATCTCAACTAATCTCATTGCATAAGACCCTATAATATTTGAGTGTCAAAGAAATTTGTAAGATATTAATATATAGATCTTGCTGTATTATTAGTAGATCTC
TATTATTAGTAGAACAAGGCTACATTGGTTATCACATAGAAAATATTACAAGATCGTGTTGTATTACAAGTTCGGGAGAAAGAACACTTTTTCATTTTCGTTTGCTCAGA
CTGCTTTTATCATTTTTATGTGTTTCTTGAGCCAAAATAGGAGTTGATTCTTCAAAGGTTGGAAGAGATGTTATTGATCGAGGAAAATAAAAGCAAAGGAGAGGCACAAT
AATATTCTTCC

Protein sequence

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MDPPTQNTSLQRLQNVEKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYHQVKMEDS

Lsi11G015530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome