; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G015730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G015730
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Genome locationchr11:24057006..24059851
RNA-Seq ExpressionLsi11G015730
SyntenyLsi11G015730
Gene Ontology termsGO:0009299 - mRNA transcription (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR006936 - ALOG domain
IPR040222 - ALOG family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589232.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3892.94Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK T+T+Q+KG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG

XP_008455303.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo]9.3e-3886.81Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGNILDE
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGS ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK ++ +QTKGG   D+
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGNILDE

XP_022930813.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]1.9e-3892.94Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK T+T+Q+KG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG

XP_023530720.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]1.9e-3892.94Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK T+T+Q+KG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG

XP_038887380.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Benincasa hispida]5.5e-3893.02Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG
        MFYGQPEPP PCTCPLRQAWGSLDALIGRLRAAYEE GGS ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK TSTSQ KGG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG

TrEMBL top hitse value%identityAlignment
A0A1S3C1B9 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 104.5e-3886.81Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGNILDE
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGS ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK ++ +QTKGG   D+
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGNILDE

A0A1S3ZAL3 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like2.2e-3790.59Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG
        +FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREV+ECQ+KARGIPYKKKKKKI  TS +KG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG

A0A314LC53 Protein light-dependent short hypocotyls 102.2e-3790.59Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG
        +FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLREV+ECQ+KARGIPYKKKKKKI  TS +KG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG

A0A5D3C6X1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 101.0e-3788.04Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITST-SQTKGGNILDE
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGS ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK +ST +QTKGG   D+
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITST-SQTKGGNILDE

A0A6J1EWG4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like9.1e-3992.94Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GGSPETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK T+T+Q+KG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG

SwissProt top hitse value%identityAlignment
A2XED8 Protein G1-like72.1e-3275Show/hide
Query:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG
        FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEE GG+PE+NPFA+ A+R+YLREVR+ QAKARGIPY+KKK+K +  +Q  G
Subjt:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG

A2Y5N0 Protein G1-like81.4e-3176.54Show/hide
Query:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQ
        +YGQP PPAPC CPLRQAWGSLDALIGRLRAAYEE G +PE+NPFA+ A+R+YLREVR+ QAKARGIPY+KKK+K T   Q
Subjt:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQ

Q941W1 Protein G1-like72.1e-3275Show/hide
Query:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG
        FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEE GG+PE+NPFA+ A+R+YLREVR+ QAKARGIPY+KKK+K +  +Q  G
Subjt:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKG

Q9S7R3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 107.4e-3889.53Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GG PETNPFASGAIRVYLREVRECQAKARGIPYKKKKKK   T +  GG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG

Q9SN52 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 91.0e-3179.75Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQ-GGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKIT
        +F+GQP+PP PCTCPL+QAWGSLDALIGRLRAAYEE  GGSP+TNPFA+G+IRV+LREVRE QAKARGIPY+KKK++ T
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQ-GGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKIT

Arabidopsis top hitse value%identityAlignment
AT1G07090.1 Protein of unknown function (DUF640)1.2e-3070.73Show/hide
Query:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQT
        ++G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEE GG P++NPFA+ A+R+YLREVRE QAKARGIPY+KKK+K   T  T
Subjt:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQT

AT2G42610.1 Protein of unknown function (DUF640)5.3e-3989.53Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GG PETNPFASGAIRVYLREVRECQAKARGIPYKKKKKK   T +  GG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG

AT2G42610.2 Protein of unknown function (DUF640)5.3e-3989.53Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG
        MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE GG PETNPFASGAIRVYLREVRECQAKARGIPYKKKKKK   T +  GG
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGG

AT3G23290.2 Protein of unknown function (DUF640)4.0e-3178.67Show/hide
Query:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKK
        F+G P PPAPC CPLRQAWGSLDALIGRLRAA+EE GGSPETNPF + A+R+YLREVR+ QAKARGI Y+KKK+K
Subjt:  FYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKK

AT4G18610.1 Protein of unknown function (DUF640)7.4e-3379.75Show/hide
Query:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQ-GGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKIT
        +F+GQP+PP PCTCPL+QAWGSLDALIGRLRAAYEE  GGSP+TNPFA+G+IRV+LREVRE QAKARGIPY+KKK++ T
Subjt:  MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQ-GGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKIT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAACA
AGGTGGTTCACCAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTCAGGGAGGTCAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGA
AGAAGAAGATTACTTCTACTAGTCAAACCAAAGGAGGGAATATATTAGATGAAGGGACAAAGGAAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGGAAGTTTAGATGCTTTAATTGGGAGATTAAGAGCTGCTTATGAAGAACA
AGGTGGTTCACCAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTCAGGGAGGTCAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGA
AGAAGAAGATTACTTCTACTAGTCAAACCAAAGGAGGGAATATATTAGATGAAGGGACAAAGGAAAAGTGAAGAACTGGGAGAAGAAATTTGATAAGATCACTGACTGAA
TTGATCCCCCAAGGTTTAGCTATTTTTATTATCCTTTCAAGAATCATTAGCAAATCTTCTTTTTCTTCTTCCAAGAAGCAATATATATATATATATATATACATATATAT
ATATATATATATATATATATATTATATTGTGGAGGGGGATAGAATTTCTATCAAATTCCATTAAAGCCAGTAGTACTTATGATCAGAGAGTTTTCATTTCCATTATGCCT
TTTGAATTTTCAGCTTTTAAAAGCCTTTGATATCACAAAACTCTCAATGTACTTAATTTGCTGAGCTTTGTTATATGTGTGCATGCCTGATTTGTACTATTTTATCTTTC
AATTTGTGCTTTGTTTGCCTCTTTCTATGCAACTTCTATTGTAAGAGATGCTTAATTAGCATTGATCAATGTTTGAATTATATATATTATATTAGTTCACCTGGAGAATA
AAATTTAAATTAACTTAAA
Protein sequenceShow/hide protein sequence
MFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEQGGSPETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKITSTSQTKGGNILDEGTKEK