CuGenDBv2

Gene ID	Lsi11G015960
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Defensin-like protein 3
Genome location	chr11:24322371..24325599
RNA-Seq Expression	Lsi11G015960
Synteny	Lsi11G015960
Gene Ontology terms	GO:0031640 - killing of cells of other organism (biological process) GO:0050832 - defense response to fungus (biological process) GO:0016020 - membrane (cellular component)
InterPro domains	IPR008176 - Defensin, plant IPR036574 - Knottin, scorpion toxin-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0062792.1 defensin-like protein 3 [Cucumis melo var. makuwa]

5.0e-28

87.5

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Query:  MAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKI
        M GEGLRKLT VV IFL+  ASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSG++ I
Subjt:  MAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKI

KAA0062794.1 defensin-like protein 3 [Cucumis melo var. makuwa]

2.0e-24

71.05

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Query:  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC
        MAG   W+KLTF  F+FL++ASGW + ETEGK C+KQSPSFKG+CTS D CVKAC+ DMWY+G CSNGLCICTV C
Subjt:  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC

KAE8646110.1 hypothetical protein Csa_016182 [Cucumis sativus]

1.5e-24

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Query:  MAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKINYKR
        M GEGLRKLT VV IF LA ASGWMVVQTEGLTCY+PST FQGTCN+A+EC  VCFYQEGWDDGFCS ++ +  K+
Subjt:  MAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKINYKR

KGN44293.1 hypothetical protein Csa_016568 [Cucumis sativus]

5.8e-24

72.73

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Query:  MAGSEGWRKLTFAVFIF-LALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC
        MAG  GW+KLTF  FIF LA+ASGW ++ET GK C+KQS SFKG+C S D CVKAC+ DMWYDGFCSNGLCICTV C
Subjt:  MAGSEGWRKLTFAVFIF-LALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC

XP_038887289.1 defensin-like protein 2 [Benincasa hispida]

1.9e-27

77.63

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Query:  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC
        MAG EGWRKLT  +FIFLALASGW V+ETEGKTC+KQSPSF+GQCTS + CV AC+NDMWY+G+CSNGLCIC V C
Subjt:  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K447 Uncharacterized protein

2.8e-24

72.73

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Query:  MAGSEGWRKLTFAVFIF-LALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC
        MAG  GW+KLTF  FIF LA+ASGW ++ET GK C+KQS SFKG+C S D CVKAC+ DMWYDGFCSNGLCICTV C
Subjt:  MAGSEGWRKLTFAVFIF-LALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC

A0A5A7V3H5 Defensin-like protein 3

2.4e-28

87.5

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Query:  MAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKI
        M GEGLRKLT VV IFL+  ASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSG++ I
Subjt:  MAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKI

A0A5D3BCI9 Defensin-like protein 3

9.6e-25

71.05

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Query:  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC
        MAG   W+KLTF  F+FL++ASGW + ETEGK C+KQSPSFKG+CTS D CVKAC+ DMWY+G CSNGLCICTV C
Subjt:  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC

A0A6J1EUK4 defensin Tk-AMP-D4-like

2.8e-16

65.71

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Query:  MAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNR
        MAG+ LR L  VVFIF LALASGWMVVQTEG TCYK + AF G+C S   C   C   EGWDDGFCSG++
Subjt:  MAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNR

W5RQN1 Defensin-like protein 3

4.2e-20

63.16

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Query:  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC
        MAGSE WRKLT  +FIFL+LASGW V ETEG+ CY+ SPSFKG+C+S + C+  C      DGFC++G CICTVPC
Subjt:  MAGSEGWRKLTFAVFIFLALASGWTVMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC

SwissProt top hits

e value

%identity

Alignment

Q39182 Defensin-like protein 2

1.3e-05

39.39

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Query:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRK
        +R ++AV+ +F++ +A+G   V  E  TC   S  F+GTC SA  C  VC + EG+  G C G R+
Subjt:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRK

Q41914 Defensin-like protein 4

3.1e-04

36.36

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Query:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRK
        +R ++AV+F+ ++ +A+G   V  E  TC   S  F+G C S   C  VC + EG+  G C G R+
Subjt:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRK

Q9ZUL7 Defensin-like protein 1

2.4e-04

34.78

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Query:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKINY
        +R ++A + +F++ +A+G   V  E  TC   S  F+G C S   C  VC + EG+  G C G R+  Y
Subjt:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKINY

Arabidopsis top hits

e value

%identity

Alignment

AT2G02100.1 low-molecular-weight cysteine-rich 69

8.9e-07

39.39

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Query:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRK
        +R ++AV+ +F++ +A+G   V  E  TC   S  F+GTC SA  C  VC + EG+  G C G R+
Subjt:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRK

AT2G02120.1 Scorpion toxin-like knottin superfamily protein

2.2e-05

36.36

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Query:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRK
        +R ++AV+F+ ++ +A+G   V  E  TC   S  F+G C S   C  VC + EG+  G C G R+
Subjt:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRK

AT2G02130.1 low-molecular-weight cysteine-rich 68

1.7e-05

34.78

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Query:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKINY
        +R ++A + +F++ +A+G   V  E  TC   S  F+G C S   C  VC + EG+  G C G R+  Y
Subjt:  LRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKINY

Sequences

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CDS sequence

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ATGGGGAAAGATAAAGGAATGGCGGGAGAAGGATTAAGAAAGCTCACAGCTGTGGTGTTCATCTTCCTGTTAGCCCTTGCTTCTGGGTGGATGGTGGTGCAGACGGAGGG
GCTGACTTGCTATAAACCGAGCACGGCGTTTCAGGGAACGTGCAATTCAGCGGAGGAATGTGGTAGAGTTTGTTTTTATCAAGAGGGGTGGGATGATGGGTTTTGTTCAG
GAAACAGAAAGATTAATTACAAGAGAATTAAAGACATGGCTGGATCAGAAGGATGGAGAAAACTCACATTTGCGGTGTTCATCTTCCTAGCCCTTGCTTCTGGATGGACG
GTGATGGAGACGGAAGGAAAGACTTGCTACAAGCAGAGCCCGTCGTTCAAGGGACAATGTACTTCAAAGGATGCTTGTGTTAAAGCTTGCAATAACGATATGTGGTACGA
CGGATTTTGCTCAAATGGTTTATGCATTTGTACCGTGCCTTGCTGA

mRNA sequence

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Protein sequence

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MGKDKGMAGEGLRKLTAVVFIFLLALASGWMVVQTEGLTCYKPSTAFQGTCNSAEECGRVCFYQEGWDDGFCSGNRKINYKRIKDMAGSEGWRKLTFAVFIFLALASGWT
VMETEGKTCYKQSPSFKGQCTSKDACVKACNNDMWYDGFCSNGLCICTVPC

Lsi11G015960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome