CuGenDBv2

Gene ID	Lsi11G016140
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein
Genome location	chr11:24472455..24473069
RNA-Seq Expression	Lsi11G016140
Synteny	Lsi11G016140
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004139828.2 uncharacterized protein LOC101213346 [Cucumis sativus]

8.4e-105

97.06

Show/hide

Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDD+ +KALS+ME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHG ACKRSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCNN
        LCNN
Subjt:  LCNN

XP_008447121.1 PREDICTED: uncharacterized protein LOC103489644 [Cucumis melo]

6.4e-105

97.06

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Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDD+ +KALSIME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHG ACKRSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLG+IRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCNN
        LCNN
Subjt:  LCNN

XP_022952110.1 uncharacterized protein LOC111454873 [Cucurbita moschata]

1.5e-101

94.58

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Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDDN +KALS+ME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFF+FHSTA+LLLFNASTKDFHG AC RSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTD+EAHLEKLLEREKEDRNLL KCVDELKRKG+EFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCN
        LCN
Subjt:  LCN

XP_023553637.1 uncharacterized protein LOC111811128 [Cucurbita pepo subsp. pepo]

1.5e-101

94.58

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Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDDN +KALS+ME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFF+FHSTA+LLLFNASTKDFHG AC RSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTD+EAHLEKLLEREKEDRNLL KCVDELKRKG+EFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCN
        LCN
Subjt:  LCN

XP_038888007.1 uncharacterized protein LOC120077946 [Benincasa hispida]

3.5e-103

97.06

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Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDDN +KALSIME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVR+EITMLHIFFFVFHSTAILLLFNASTKDFHG ACKRSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFF VSCMFLGIIRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCNN
        LCNN
Subjt:  LCNN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K424 Uncharacterized protein

4.1e-105

97.06

Show/hide

Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDD+ +KALS+ME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHG ACKRSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCNN
        LCNN
Subjt:  LCNN

A0A1S3BHA3 uncharacterized protein LOC103489644

3.1e-105

97.06

Show/hide

Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDD+ +KALSIME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHG ACKRSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLG+IRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCNN
        LCNN
Subjt:  LCNN

A0A5A7U7C4 Putative transmembrane protein

3.1e-105

97.06

Show/hide

Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDD+ +KALSIME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHG ACKRSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLG+IRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCNN
        LCNN
Subjt:  LCNN

A0A6J1GKU6 uncharacterized protein LOC111454873

7.2e-102

94.58

Show/hide

Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDDN +KALS+ME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFF+FHSTA+LLLFNASTKDFHG AC RSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTD+EAHLEKLLEREKEDRNLL KCVDELKRKG+EFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCN
        LCN
Subjt:  LCN

A0A6J1I0X4 uncharacterized protein LOC111468053

1.6e-101

94.09

Show/hide

Query:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL
        MDDN +KALS+ME KPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFF+FHSTA+LLLFNASTKDFHG AC RSWIPSL
Subjt:  MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSL

Query:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
        CSLLFSLGIIWAVRYKTD+EAHL+KLLEREKEDRNLL KCVDELKRKG+EFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV
Subjt:  CSLLFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVV

Query:  LCN
        LCN
Subjt:  LCN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

2.6e-80

76.02

Show/hide

Query:  IMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGA---ACKRSWIPSLCSLLFSL
        IMEAK  HPLHQIA+TPTHKLLLKQWLKEEELI  R+S KE+QIDSVR+EIT L+IFFF+FHS ++LLLF+AS+     A   ACKRSWIPSLC+LL SL
Subjt:  IMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGA---ACKRSWIPSLCSLLFSL

Query:  GIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVVLCN
        GIIWAVRYK++VE+HLEKLLEREKED  LL KCV+ELK+KGIEFDLLKEVDALRRAKSLRVE+K V+KWS+RDF+TLFFFSVSC+ L +IR++LC+
Subjt:  GIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVVLCN

AT5G56120.1 unknown protein

8.9e-28

Show/hide

Query:  LSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKD-----FHGAACKRSWIPSLCSL
        + I++    HPL +I+E+P H LLLK W +EE+L   R+ LKE++++S+++EI  L  FF VFH     L++++S  D        A CK+ WIPS  SL
Subjt:  LSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKD-----FHGAACKRSWIPSLCSL

Query:  LFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAK-AVRKWSSRDFITLFFFSVSCMFLGIIRVVLC
          SL +++ V+ K  V   + + + RE+ D   L++CV EL+ KG  FDL KE  + +R KS  VE K     W S+  IT+     + +F  + + +LC
Subjt:  LFSLGIIWAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAK-AVRKWSSRDFITLFFFSVSCMFLGIIRVVLC

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGATAATGGAAGCAAAGCCTTATCGATCATGGAAGCAAAGCCTTCACACCCACTTCACCAAATTGCAGAAACCCCAACCCACAAACTTCTTCTCAAGCAGTGGCT
GAAGGAAGAAGAACTAATCTTTGGCAGAATTTCACTGAAAGAAACCCAAATCGACTCTGTGAGAAAAGAAATCACAATGCTTCACATCTTCTTCTTCGTCTTCCACTCCA
CAGCCATACTCCTCCTCTTCAATGCGTCGACCAAGGACTTCCATGGCGCAGCGTGCAAGAGATCGTGGATTCCGTCGCTCTGTTCTCTCTTGTTTTCTCTGGGCATCATT
TGGGCAGTGAGATACAAGACGGATGTTGAGGCCCATTTAGAGAAATTGCTGGAAAGGGAAAAAGAAGACAGGAATTTGCTGTCAAAGTGTGTGGATGAATTGAAGAGGAA
AGGGATTGAATTTGATTTGCTGAAGGAAGTGGATGCGCTGAGGAGGGCAAAGAGTCTGAGGGTTGAAGCTAAGGCTGTGAGAAAGTGGTCTTCAAGAGATTTCATCACTC
TGTTTTTCTTCTCTGTTTCTTGTATGTTTCTTGGGATTATTAGGGTTGTTCTATGTAACAATTAA

mRNA sequence

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Protein sequence

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MDDNGSKALSIMEAKPSHPLHQIAETPTHKLLLKQWLKEEELIFGRISLKETQIDSVRKEITMLHIFFFVFHSTAILLLFNASTKDFHGAACKRSWIPSLCSLLFSLGII
WAVRYKTDVEAHLEKLLEREKEDRNLLSKCVDELKRKGIEFDLLKEVDALRRAKSLRVEAKAVRKWSSRDFITLFFFSVSCMFLGIIRVVLCNN

Lsi11G016140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome