CuGenDBv2

Gene ID	Lsi11G016220
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	KRR1 small subunit processome component
Genome location	chr11:24546463..24551748
RNA-Seq Expression	Lsi11G016220
Synteny	Lsi11G016220
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005730 - nucleolus (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR024166 - Ribosomal RNA assembly KRR1 IPR036612 - K Homology domain, type 1 superfamily IPR041174 - Krr1, KH1 domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7012057.1 mis3 [Cucurbita argyrosperma subsp. argyrosperma]

5.8e-178

88.33

Show/hide

Query:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD
        E IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYL+D WPVVKSALKEFG+ C+LNL+EGSMTVSTTRKTKD
Subjt:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD

Query:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
        PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
Subjt:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC

Query:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT
        MMNKMHPVYNIKILMMKKELANDPALANENWDR       K VKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Subjt:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT

Query:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        AENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYIASSSD+ HFKKRSK SS
Subjt:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

XP_022952886.1 KRR1 small subunit processome component homolog [Cucurbita moschata]

2.6e-178

88.33

Show/hide

Query:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD
        E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFD SWNEGGMLEVSSFSTLFPVYREKYL+D WPVVKSALKEFG+ C+LNL+EGSMTVSTTRKTKD
Subjt:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD

Query:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
        PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
Subjt:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC

Query:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT
        MMNKMHPVYNIKILMMKKELANDPALANENWDR       KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Subjt:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT

Query:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        AENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYIASSSD+ HFKKRSK SS
Subjt:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

XP_022969421.1 KRR1 small subunit processome component homolog [Cucurbita maxima]

1.3e-177

88.06

Show/hide

Query:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD
        E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYL+D WPVVKSALKEFG+ CELNL+EGSMTVSTTRKTKD
Subjt:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD

Query:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
        PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
Subjt:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC

Query:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT
        MMNKMHPVYNIKILMMKKELANDPALA+ENWDR       KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Subjt:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT

Query:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        AENKRKREA+FVPPKE PKQDTK+DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYIA SSD+ HFKKRSK SS
Subjt:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

XP_023511730.1 KRR1 small subunit processome component homolog [Cucurbita pepo subsp. pepo]

1.5e-178

88.33

Show/hide

Query:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD
        E++EQQQNKTKHKGKHDKPKPWDEDPNIDRW VEKFDPSWNEGGMLEVSSFSTLFPVYREKYL+D WPVVKSALKEFG+ CELNL+EGSMTVSTTRKTKD
Subjt:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD

Query:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
        PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
Subjt:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC

Query:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT
        MMNKMHPVYNIKILMMKKELANDPALANENWDR       KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Subjt:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT

Query:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        AENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYIASSSD+ HFKKRSK SS
Subjt:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

XP_038888683.1 KRR1 small subunit processome component homolog [Benincasa hispida]

1.7e-182

89.95

Show/hide

Query:  MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTK
        MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLR+TWPVVKSALKEFG+VCELNLIEGSMTVSTTRKT+
Subjt:  MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTK

Query:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEE
        DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRR+VEE
Subjt:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEE

Query:  CMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK
        CMMNKMHPVYNIKILMMKKELANDPALANENWDR       KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK
Subjt:  CMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK

Query:  TAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        TAENKRKREAAFVPPKEPP QDT+ D DNNDI+EMAKALKEKAKAFGKRKA E INPEAYIASSSD+PHFKKRSKTSS
Subjt:  TAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7G6 KRR1 small subunit processome component

5.3e-177

88.39

Show/hide

Query:  MEDIEQQ-QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKT
        MEDIEQQ QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFG+V ELNLIEGSMTVSTTRKT
Subjt:  MEDIEQQ-QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKT

Query:  KDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE
        +DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRR+VE
Subjt:  KDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVE

Query:  ECMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAE
        ECMMNKMHPVYNIKILMM+KELANDPALANENWDR       KTVKQKKVKSK KK YTPFPPPQQPSQIDIQLETGEYFL++KKKSAKKWQDKQEKQAE
Subjt:  ECMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAE

Query:  KTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        KTA+NKRKREAAFVPPKE PKQDTK DGD NDIAEMAK+LKEKAKAFGKRKAAETINPEAYIASSSD+P FKKRSKTSS
Subjt:  KTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

A0A1S3BGN7 KRR1 small subunit processome component

2.6e-176

88.39

Show/hide

Query:  MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTK
        MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFG+V ELNLIEGSMTVSTTRKT+
Subjt:  MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTK

Query:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEE
        DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRR+VEE
Subjt:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEE

Query:  CMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK
        CMMNKMHPVYNIKILMMKKELANDPALANENWDR       KTVKQKKVKSK KK YTPFPPPQQPSQIDIQLETGEYFL++KKKSAKKWQDKQEKQAEK
Subjt:  CMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK

Query:  TAENKRKREAAFVPPKEPPK-QDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        TAENKRKREAAFVPP E PK QDT+ DGD NDIAEMAK LKEKAKAFGKRKAAETINPEAYIASSSD+P FKKRSKTSS
Subjt:  TAENKRKREAAFVPPKEPPK-QDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

A0A5D3CP78 KRR1 small subunit processome component

1.8e-177

88.92

Show/hide

Query:  MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTK
        MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFG+V ELNLIEGSMTVSTTRKT+
Subjt:  MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTK

Query:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEE
        DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRR+VEE
Subjt:  DPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEE

Query:  CMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK
        CMMNKMHPVYNIKILMMKKELANDPALANENWDR       KTVKQKKVKSK KK YTPFPPPQQPSQIDIQLETGEYFL++KKKSAKKWQDKQEKQAEK
Subjt:  CMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK

Query:  TAENKRKREAAFVPPKEPPK-QDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        TAENKRKREAAFVPPKE PK QDT+ DGD NDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSD+P FKKRSKTSS
Subjt:  TAENKRKREAAFVPPKEPPK-QDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

A0A6J1GLG6 KRR1 small subunit processome component

1.3e-178

88.33

Show/hide

Query:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD
        E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFD SWNEGGMLEVSSFSTLFPVYREKYL+D WPVVKSALKEFG+ C+LNL+EGSMTVSTTRKTKD
Subjt:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD

Query:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
        PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
Subjt:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC

Query:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT
        MMNKMHPVYNIKILMMKKELANDPALANENWDR       KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Subjt:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT

Query:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        AENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYIASSSD+ HFKKRSK SS
Subjt:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

A0A6J1HWB5 KRR1 small subunit processome component

6.2e-178

88.06

Show/hide

Query:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD
        E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYL+D WPVVKSALKEFG+ CELNL+EGSMTVSTTRKTKD
Subjt:  EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKD

Query:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
        PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC
Subjt:  PYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEEC

Query:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT
        MMNKMHPVYNIKILMMKKELANDPALA+ENWDR       KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Subjt:  MMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT

Query:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS
        AENKRKREA+FVPPKE PKQDTK+DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYIA SSD+ HFKKRSK SS
Subjt:  AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

SwissProt top hits

e value

%identity

Alignment

B3LU25 KRR1 small subunit processome component

3.2e-78

52.61

Show/hide

Query:  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKL
        H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  AL +  + C L+L+EGSMTV TTRKT DP II+KARDLIKL
Subjt:  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKL

Query:  LSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKI
        L+RSVP PQA+KIL D+M CD+IKIGN V                     KALE+LT CYILVQGNTV+AMG FKGLK+VRR+VE+CM N +HP+Y+IK 
Subjt:  LSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKI

Query:  LMMKKELANDPALANENWDR----------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA
        LM+K+ELA  P LANE+W R             K KK+++ +KK YTPFPP Q P ++D+++E+GEYFLS ++K  KK  +++EKQ E+  E + +R   
Subjt:  LMMKKELANDPALANENWDR----------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA

Query:  FVPPKE
        F+ P+E
Subjt:  FVPPKE

B5VEQ2 KRR1 small subunit processome component

3.2e-78

52.61

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Query:  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKL
        H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  AL +  + C L+L+EGSMTV TTRKT DP II+KARDLIKL
Subjt:  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKL

Query:  LSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKI
        L+RSVP PQA+KIL D+M CD+IKIGN V                     KALE+LT CYILVQGNTV+AMG FKGLK+VRR+VE+CM N +HP+Y+IK 
Subjt:  LSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKI

Query:  LMMKKELANDPALANENWDR----------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA
        LM+K+ELA  P LANE+W R             K KK+++ +KK YTPFPP Q P ++D+++E+GEYFLS ++K  KK  +++EKQ E+  E + +R   
Subjt:  LMMKKELANDPALANENWDR----------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA

Query:  FVPPKE
        F+ P+E
Subjt:  FVPPKE

C8Z430 KRR1 small subunit processome component

3.2e-78

52.61

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Query:  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKL
        H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  AL +  + C L+L+EGSMTV TTRKT DP II+KARDLIKL
Subjt:  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKL

Query:  LSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKI
        L+RSVP PQA+KIL D+M CD+IKIGN V                     KALE+LT CYILVQGNTV+AMG FKGLK+VRR+VE+CM N +HP+Y+IK 
Subjt:  LSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKI

Query:  LMMKKELANDPALANENWDR----------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA
        LM+K+ELA  P LANE+W R             K KK+++ +KK YTPFPP Q P ++D+++E+GEYFLS ++K  KK  +++EKQ E+  E + +R   
Subjt:  LMMKKELANDPALANENWDR----------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA

Query:  FVPPKE
        F+ P+E
Subjt:  FVPPKE

O74777 KRR1 small subunit processome component homolog

5.6e-83

53.5

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Query:  NKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKA
        NK K   ++ + KPWD D +ID WK+E F    ++   LE SSF+TLFP YREKYLR+ WP V  AL +FG+ C L+L+EGSMTV TTRKT DPY I+ A
Subjt:  NKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKA

Query:  RDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHP
        RDLIKLL+RSVP PQA+KI+ D + CDIIKIGN++R                    KALE+LT CYILVQG TVA MG +KGLK+VRRIVE+CM N +HP
Subjt:  RDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHP

Query:  VYNIKILMMKKELANDPALANENWD--------RKTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRK
        +Y+IK LM+K+ELA DP LANE+WD        R   ++K  K ++ K YTPFPP Q PS++D+++E+GEYFL  ++K  KK  +K+E+Q EK  E +++
Subjt:  VYNIKILMMKKELANDPALANENWD--------RKTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRK

Query:  REAAFVPPKEPPKQ
        R  AF+PP+E  K+
Subjt:  REAAFVPPKEPPKQ

P25586 KRR1 small subunit processome component

3.2e-78

52.61

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Query:  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKL
        H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  AL +  + C L+L+EGSMTV TTRKT DP II+KARDLIKL
Subjt:  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKL

Query:  LSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKI
        L+RSVP PQA+KIL D+M CD+IKIGN V                     KALE+LT CYILVQGNTV+AMG FKGLK+VRR+VE+CM N +HP+Y+IK 
Subjt:  LSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKI

Query:  LMMKKELANDPALANENWDR----------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA
        LM+K+ELA  P LANE+W R             K KK+++ +KK YTPFPP Q P ++D+++E+GEYFLS ++K  KK  +++EKQ E+  E + +R   
Subjt:  LMMKKELANDPALANENWDR----------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA

Query:  FVPPKE
        F+ P+E
Subjt:  FVPPKE

Arabidopsis top hits

e value

%identity

Alignment

AT5G08420.1 RNA-binding KH domain-containing protein

2.5e-131

66.49

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Query:  QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVK
        + + K KGKH+KPKPWD+DPNIDRW +EKFDP+WN  GM E S+FSTLFP YREKYL++ WP V+SALKE+GV C+LNL+EGSMTVSTTRKT+DPYIIVK
Subjt:  QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVK

Query:  ARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMH
        ARDLIKLLSRSVPAPQAIKIL+DE+QCDIIKIGNLVR                    KALEILT CYILVQG+TVAAMG FKGLKQ+RRIVE+C+ N MH
Subjt:  ARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMH

Query:  PVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRK
        PVY+IK LMMKKEL  DPALANE+WDR       K VKQKK KSK+KKPYTPFPPPQ PS+ID+QLE+GEYF+SDKKKS KKWQ+KQEKQ+EK+ ENKRK
Subjt:  PVYNIKILMMKKELANDPALANENWDR-------KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRK

Query:  REAAFVPPKEPPKQDT---KLDGDNNDIAEMAKALKEKAKAFGK-RKAAETINPEAYIA---SSSDKPHFKKR
        R+A+F+PP+EP   ++   K +   NDI E+  +LK K K   K +K  E +N E YIA   SS+DK   K +
Subjt:  REAAFVPPKEPPKQDT---KLDGDNNDIAEMAKALKEKAKAFGK-RKAAETINPEAYIA---SSSDKPHFKKR

Sequences

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CDS sequence

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ATGGAAGACATAGAGCAACAGCAAAATAAAACCAAACATAAGGGGAAGCATGACAAGCCAAAGCCATGGGACGAAGATCCTAACATTGACCGTTGGAAAGTGGAGAAGTT
TGATCCCTCTTGGAATGAAGGTGGCATGCTCGAAGTTAGCTCTTTCTCTACTCTGTTTCCTGTGTACCGAGAAAAATATTTGCGAGACACATGGCCAGTTGTGAAGTCTG
CGCTGAAAGAGTTTGGTGTTGTTTGTGAACTGAATCTGATCGAAGGATCAATGACAGTTTCAACAACTAGAAAGACTAAGGATCCATATATTATTGTCAAGGCAAGGGAT
CTGATCAAGCTTTTGTCAAGAAGCGTTCCTGCTCCTCAGGCAATAAAAATACTGGACGATGAAATGCAATGTGACATTATCAAGATTGGGAACTTGGTACGCAAGAAGGC
GCTTGAAATATTGACAGGATGCTATATTCTTGTTCAAGGCAACACAGTTGCTGCGATGGGTTCATTCAAAGGTTTAAAGCAAGTTAGGAGGATAGTGGAAGAGTGCATGA
TGAATAAAATGCATCCTGTATATAATATTAAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTTGCAAATGAAAATTGGGATAGGAAAACTGTTAAACAA
AAGAAGGTTAAGAGTAAACAGAAGAAGCCGTACACACCTTTCCCTCCTCCTCAGCAACCTAGCCAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAA
AAAGAAGTCAGCAAAGAAATGGCAGGATAAACAGGAGAAGCAAGCAGAAAAAACTGCTGAAAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGCCACCGA
AGCAGGATACGAAACTTGATGGAGATAACAATGATATAGCCGAAATGGCAAAGGCCTTGAAGGAAAAGGCTAAGGCATTTGGTAAACGAAAAGCTGCGGAAACTATCAAT
CCTGAAGCTTACATTGCATCATCCAGCGATAAGCCCCATTTCAAGAAGAGATCCAAGACATCGTCGTAG

mRNA sequence

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AATTTTTACAAAATCCTCATATCTTTCCTTTACTCCGTACGCGCGTCTTCTTTTCTCCTCAGAGTTTTCCTTCTCTGTAAACCCTATTTCACGTTCAAGTGTCCCTCCCT
CCCATTACCAGCTATGCACACTGCCGCCGCCGCCCGCCGCTCCTGCTCGACGTAGTCTCGTGGCTGCCGCCCCTCCTGCACTCCCAACTGCTGCAGTCTCTGCCTTTCGA
CGAACTCGCCGCCGCTCCCTCCCTCTCGCACTCTCTCGCCTCTTGAAGCAATCGGAGTTTCTCGCACTCTCTCTCCGTCAGCCCCTGAACCGCGCCGTTCGCGAGATTGG
CCCGTCGACCAGATTCGCCCTAAGATTTTTCATCTAGCTTTAGCTCCTTCCCATTGCTTCTCACGGTTTTCCTGAATAATCCCACACGGTGATGGAAGACATAGAGCAAC
AGCAAAATAAAACCAAACATAAGGGGAAGCATGACAAGCCAAAGCCATGGGACGAAGATCCTAACATTGACCGTTGGAAAGTGGAGAAGTTTGATCCCTCTTGGAATGAA
GGTGGCATGCTCGAAGTTAGCTCTTTCTCTACTCTGTTTCCTGTGTACCGAGAAAAATATTTGCGAGACACATGGCCAGTTGTGAAGTCTGCGCTGAAAGAGTTTGGTGT
TGTTTGTGAACTGAATCTGATCGAAGGATCAATGACAGTTTCAACAACTAGAAAGACTAAGGATCCATATATTATTGTCAAGGCAAGGGATCTGATCAAGCTTTTGTCAA
GAAGCGTTCCTGCTCCTCAGGCAATAAAAATACTGGACGATGAAATGCAATGTGACATTATCAAGATTGGGAACTTGGTACGCAAGAAGGCGCTTGAAATATTGACAGGA
TGCTATATTCTTGTTCAAGGCAACACAGTTGCTGCGATGGGTTCATTCAAAGGTTTAAAGCAAGTTAGGAGGATAGTGGAAGAGTGCATGATGAATAAAATGCATCCTGT
ATATAATATTAAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTTGCAAATGAAAATTGGGATAGGAAAACTGTTAAACAAAAGAAGGTTAAGAGTAAAC
AGAAGAAGCCGTACACACCTTTCCCTCCTCCTCAGCAACCTAGCCAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAA
TGGCAGGATAAACAGGAGAAGCAAGCAGAAAAAACTGCTGAAAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGCCACCGAAGCAGGATACGAAACTTGA
TGGAGATAACAATGATATAGCCGAAATGGCAAAGGCCTTGAAGGAAAAGGCTAAGGCATTTGGTAAACGAAAAGCTGCGGAAACTATCAATCCTGAAGCTTACATTGCAT
CATCCAGCGATAAGCCCCATTTCAAGAAGAGATCCAAGACATCGTCGTAGAAGTTGGTAAGTATATTGTAAGGGGAGCTTCCACCCTTGTGTATGAAATTACCAAAGCTT
CTAGTTTTTTGTATGACTTCATTTTTTTGTTACATGTCGGATTAGAATCAGGGTTGTTTTAATGAGAAAAGCATGAGTCTTCTTCTTC

Protein sequence

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MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARD
LIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRKKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRKTVKQ
KKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETIN
PEAYIASSSDKPHFKKRSKTSS

Lsi11G016220 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome