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Lsi11G016240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G016240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCYSTM domain-containing protein
Genome locationchr11:24585727..24586925
RNA-Seq ExpressionLsi11G016240
SyntenyLsi11G016240
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044850 - Cysteine-rich and transmembrane domain-containing protein WIH1/2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646099.1 hypothetical protein Csa_015748 [Cucumis sativus]5.0e-3189.33Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS
        MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYPVRDGPQYPHQTNF  QTQSRGDGFWKGWLVS
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS
KAG7023002.1 hypothetical protein SDJN02_16738, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-2884Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS
        MSQY HQ+IPM YPAPPPSYPA E+ K   SGPYVAAPPPVGYPVRDGPQYPHQT FTPQTQS+GDGFWKGW VS
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS
XP_008447127.1 PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo]2.0e-2787.32Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
        MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYPVRDGPQYPHQTN   QTQSRGDGFWKG
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
XP_011659032.1 cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus]4.0e-2888.73Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
        MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYPVRDGPQYPHQTNF  QTQSRGDGFWKG
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
XP_038888289.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa hispida]8.9e-2889.04Show/hide
Query:  MSQYSHQEIPMGYPA-PPPSYPAGEQDKVGKS-GPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
        MSQY  QEIPMGYP  PPPSYPAG QD  GKS GPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
Subjt:  MSQYSHQEIPMGYPA-PPPSYPAGEQDKVGKS-GPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
TrEMBL top hitse value%identityAlignment
A0A0A0K5N8 CYSTM domain-containing protein1.9e-2888.73Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
        MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYPVRDGPQYPHQTNF  QTQSRGDGFWKG
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
A0A1S3BHK1 cysteine-rich and transmembrane domain-containing protein A-like9.6e-2887.32Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
        MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYPVRDGPQYPHQTN   QTQSRGDGFWKG
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
A0A5A7USJ3 Cysteine-rich and transmembrane domain-containing protein A-like9.6e-2887.32Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
        MSQY +QEI MGYPAPPPSY AGEQ K GKSGPYVAAPPPVGYPVRDGPQYPHQTN   QTQSRGDGFWKG
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
A0A6J1JEV3 cysteine-rich and transmembrane domain-containing protein B-like isoform X23.0e-2185.25Show/hide
Query:  MGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
        M YPAPPPSYPA E+ K   SGPYVAAPPPVGYPVRDGPQYPHQT FTPQTQS+GDGFWKG
Subjt:  MGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
A0A6J1JJ37 cysteine-rich and transmembrane domain-containing protein B-like isoform X15.1e-2178.46Show/hide
Query:  QEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
        + + + YPAPPPSYPA E+ K   SGPYVAAPPPVGYPVRDGPQYPHQT FTPQTQS+GDGFWKG
Subjt:  QEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G32190.1 unknown protein2.7e-0641.33Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS
        MSQYS  +    YP PP S           +GPY+  PPP+GYP  D     H T    +T+S+GDGF KG L +
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS
AT2G32190.2 unknown protein3.8e-0844.59Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLV
        MSQYS  +    YP PP S           +GPY+  PPP+GYP  D     H T    +T+S+GDGF KGWLV
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLV
AT2G32210.1 unknown protein8.4e-0845.33Show/hide
Query:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS
        MSQYS  +    YP PP S           +GPYV APPP+GYP  D     H T  T +T+S+GDGF KG L +
Subjt:  MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCAATATAGCCACCAAGAAATTCCCATGGGCTATCCAGCGCCGCCACCGTCGTATCCGGCGGGAGAGCAAGATAAAGTGGGGAAATCGGGGCCTTATGTTGCAGC
TCCGCCTCCGGTTGGATATCCGGTGAGAGACGGTCCACAGTACCCTCACCAAACTAATTTCACACCCCAAACTCAATCTAGAGGAGATGGCTTCTGGAAAGGATGGTTAG
TTTCCTAA
mRNA sequenceShow/hide mRNA sequence
TGAAGAACTTGGTATCGTACAGAATTCCAATTTCCCTGCAATTTCTCTTTTCACACAAAATTCTTTCATATATTTATAAACACCATGGTTTCCCCTAATTTGCATTACAA
TTCCATCATTTCTTTGCAATTCTTAGCTTCTTCGTCTTACGATCTCGATTATTTCCGGTTTTCCGTTGTTGATTTTCCGTCATGAGTCAATATAGCCACCAAGAAATTCC
CATGGGCTATCCAGCGCCGCCACCGTCGTATCCGGCGGGAGAGCAAGATAAAGTGGGGAAATCGGGGCCTTATGTTGCAGCTCCGCCTCCGGTTGGATATCCGGTGAGAG
ACGGTCCACAGTACCCTCACCAAACTAATTTCACACCCCAAACTCAATCTAGAGGAGATGGCTTCTGGAAAGGATGGTTAGTTTCCTAAATATATATATATATATATATA
TATATAAAAGATGGTATCTATTTGCATCTTATCCTATATTTTTAAAAGTGGTTGATACTTAACTTCATATGATACTTTAAGTATCTTGCATTTTGTTAATAGCTCATTTA
AATATGTTTTTGGTGGATTGATATTTCAAAGCAACTAATCTAAAATGTGTATATTCTCAATCTAGAGATTCGATTAGAAATTTGGTCGACGTTTGAAATTTTCAACCTAC
ATTTTTAAAACATTGCATTTGGTGAGTTATTGGGGATTAAACTTAATAAAGTCGATCGTGGGCATACATTTATTAAACACAAAATAAACTTTTTGAAATCATTTGGATTG
ACCAAAAGGATAACAAGATTGGTGAAGTCAAGTTTAATATTATATCATATAACATTGTAAGGTTTGAATGTAAAACCTTCCAAACCAATATACTTTGATACCATCACAAG
CAAAAAAAAAAAAATAAAAATGAGCTAGGATATAGTTCAAAATTTTCAACTTTCCTAAGATTTTAAATCATTAAAAGAAATAAACACATAAGCCATTAGGCACTAGATTT
TAGATTAGTTGAATATTTAGATAGTTGTGATAGACGTTGATAAAGGTTTATCAGAGTCCATCAGTGGCAGAAATGATAGAAGTCTAAGTATTTTTTTTTTTTTTTTGCTA
TTTTCTATAAATAGTTTGAC
Protein sequenceShow/hide protein sequence
MSQYSHQEIPMGYPAPPPSYPAGEQDKVGKSGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGWLVS