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Lsi11G016580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G016580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor GTE9 isoform X4
Genome locationchr11:24876778..24877365
RNA-Seq ExpressionLsi11G016580
SyntenyLsi11G016580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061663.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa]1.8e-4356.81Show/hide
Query:  VNGSSTIIKPPKPK-AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKD--NDRVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLP-----TP
        V GSST IKP K K   I KPKK KP         + TM TTP +AI++ D  N+RVSM+KRRFA  ILKAQQQLS+ ER+      + +K P     TP
Subjt:  VNGSSTIIKPPKPK-AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKD--NDRVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLP-----TP

Query:  TPTQELRSEATRKVLWRKKKPPT-------------------PTPIPTPTLTRSTEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFK
        T   + R EATR+ LWRKK+P T                   PTPIP+     STEE+RKAAR+ALEELE+SV++EDSHKSVK+LE+LCGWPIPYVGGFK
Subjt:  TPTQELRSEATRKVLWRKKKPPT-------------------PTPIPTPTLTRSTEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFK

Query:  NRMEYYGLYLKNY
        NRMEYYGLYLKNY
Subjt:  NRMEYYGLYLKNY
KAG6571342.1 hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia]2.9e-1435.42Show/hide
Query:  KKVNGSSTIIKPPKPKAMIEKP--KKPKPALTMKTTTFSSTMETTPPSAIQFKDNDRVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLPTPTPTQ
        K V   S  ++    K+  +KP    P  +LT   T   +T+   P  +    +++R  ++K++FA  I KAQ+ LS+             K       +
Subjt:  KKVNGSSTIIKPPKPKAMIEKP--KKPKPALTMKTTTFSSTMETTPPSAIQFKDNDRVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLPTPTPTQ

Query:  ELRSEATRKVLWRKKKPPTPTPIPTPTLTR---STEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFKNRMEYYGLYLKN
        E   + +  V  R+  PP    +    +T      EE+R AAR+ LEE+E+ V V+DSH S++E E+LCG+PIPYVGGF NRM YYGLYLK+
Subjt:  ELRSEATRKVLWRKKKPPTPTPIPTPTLTR---STEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFKNRMEYYGLYLKN
TrEMBL top hitse value%identityAlignment
A0A0A0KGL2 Uncharacterized protein4.9e-3953.81Show/hide
Query:  KKVNGSSTIIKPPKPK--AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKDND-RVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLPTP--T
        + V  SST IKP K K   ++++PKK KP         + TMETTP +AI F D   RVSM+K RFAS ILKAQQQLS+++R   K   + +K PTP  T
Subjt:  KKVNGSSTIIKPPKPK--AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKDND-RVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLPTP--T

Query:  PTQELRSEATRKVLWRKKKP-------PTPTPI-----------------------PTPTLTRSTEELRKAARKALEELEQSVEVEDSHKSVKELEKLCG
        P +E R EATR+  WR KKP        T TP                        PTP LT STEE+R+AAR+ALE+LE+SV+VEDSHKSVK+LE+LCG
Subjt:  PTQELRSEATRKVLWRKKKP-------PTPTPI-----------------------PTPTLTRSTEELRKAARKALEELEQSVEVEDSHKSVKELEKLCG

Query:  WPIPYVGGFKNRMEYYGLYLKNY
        WPIP VGGFKNRMEYYGLYLKNY
Subjt:  WPIPYVGGFKNRMEYYGLYLKNY
A0A5D3DC97 Transcription factor GTE9 isoform X48.5e-4456.81Show/hide
Query:  VNGSSTIIKPPKPK-AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKD--NDRVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLP-----TP
        V GSST IKP K K   I KPKK KP         + TM TTP +AI++ D  N+RVSM+KRRFA  ILKAQQQLS+ ER+      + +K P     TP
Subjt:  VNGSSTIIKPPKPK-AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKD--NDRVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLP-----TP

Query:  TPTQELRSEATRKVLWRKKKPPT-------------------PTPIPTPTLTRSTEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFK
        T   + R EATR+ LWRKK+P T                   PTPIP+     STEE+RKAAR+ALEELE+SV++EDSHKSVK+LE+LCGWPIPYVGGFK
Subjt:  TPTQELRSEATRKVLWRKKKPPT-------------------PTPIPTPTLTRSTEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFK

Query:  NRMEYYGLYLKNY
        NRMEYYGLYLKNY
Subjt:  NRMEYYGLYLKNY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAGCGTGTGGTTGCGAAGAAGGTGAATGGTTCTTCGACTATCATCAAACCACCCAAGCCAAAGGCAATGATAGAGAAGCCGAAGAAACCGAAACCAGCGCTGAC
GATGAAAACGACGACGTTTTCATCGACGATGGAAACTACTCCGCCGTCAGCGATCCAGTTTAAAGATAATGATCGAGTGAGTATGATGAAGCGTAGATTCGCGAGTATAA
TCTTGAAAGCACAGCAACAACTTTCTCAAACTGAAAGACTAGGACTAAAGACGACCTACATTGTGGAGAAACTTCCGACTCCGACTCCGACTCAAGAACTGAGATCAGAA
GCCACCCGAAAGGTTTTGTGGCGGAAGAAGAAACCCCCCACTCCGACTCCGATTCCGACTCCGACTCTGACTAGAAGTACTGAAGAACTGAGAAAAGCGGCTCGAAAAGC
TTTGGAGGAGTTGGAGCAAAGCGTTGAGGTTGAAGACAGCCACAAATCGGTGAAGGAATTGGAGAAGCTGTGTGGTTGGCCGATTCCGTACGTTGGTGGTTTCAAGAACA
GGATGGAATATTATGGTTTATATTTGAAGAATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGAAGCGTGTGGTTGCGAAGAAGGTGAATGGTTCTTCGACTATCATCAAACCACCCAAGCCAAAGGCAATGATAGAGAAGCCGAAGAAACCGAAACCAGCGCTGAC
GATGAAAACGACGACGTTTTCATCGACGATGGAAACTACTCCGCCGTCAGCGATCCAGTTTAAAGATAATGATCGAGTGAGTATGATGAAGCGTAGATTCGCGAGTATAA
TCTTGAAAGCACAGCAACAACTTTCTCAAACTGAAAGACTAGGACTAAAGACGACCTACATTGTGGAGAAACTTCCGACTCCGACTCCGACTCAAGAACTGAGATCAGAA
GCCACCCGAAAGGTTTTGTGGCGGAAGAAGAAACCCCCCACTCCGACTCCGATTCCGACTCCGACTCTGACTAGAAGTACTGAAGAACTGAGAAAAGCGGCTCGAAAAGC
TTTGGAGGAGTTGGAGCAAAGCGTTGAGGTTGAAGACAGCCACAAATCGGTGAAGGAATTGGAGAAGCTGTGTGGTTGGCCGATTCCGTACGTTGGTGGTTTCAAGAACA
GGATGGAATATTATGGTTTATATTTGAAGAATTATTAG
Protein sequenceShow/hide protein sequence
MTKRVVAKKVNGSSTIIKPPKPKAMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKDNDRVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLPTPTPTQELRSE
ATRKVLWRKKKPPTPTPIPTPTLTRSTEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFKNRMEYYGLYLKNY