; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G016710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G016710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr11:24966289..24967487
RNA-Seq ExpressionLsi11G016710
SyntenyLsi11G016710
Gene Ontology termsNA
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061653.1 zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa]3.0e-7190.54Show/hide
Query:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
        MER NRGRRWANLKQRLGLKGMGCC GSWSPTSSTLTMIEGFSLS HGSSRSQREDG RSSA SGMNLAMALAAERNLR+DEGGPTGA DVKSLMRLFEE
Subjt:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE

Query:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
        MDGGDWKTKRKE ENNGDWMCCVCME SKGAAFIPCGHTFCR+  R++
Subjt:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

KAG7012019.1 hypothetical protein SDJN02_26927, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-7193.71Show/hide
Query:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
        MER N GRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEG SLSRHGSSRS REDGARSSA SG+NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
Subjt:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE

Query:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRL
        MDGGDWKTKRKESEN GDWMCCVCME SKGAAFIPCGHTFCR+
Subjt:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRL

KGN47968.1 hypothetical protein Csa_002927 [Cucumis sativus]1.4e-6887.84Show/hide
Query:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
        MER NR RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEGFSLS HGSSRSQ EDG RSSA SGMNLAMALAAERNLR DEGGPTG  DVKSLMRLFEE
Subjt:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE

Query:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
        MDGGDWKTKRKESENNGDWMCCVCME SKGAAFIPCGHTFCR+  R++
Subjt:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

XP_022953088.1 RNA-binding protein MEX3B-like [Cucurbita moschata]1.3e-7191.22Show/hide
Query:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
        MER N GRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEG SLSRHGSSRS REDGARSSA SG+NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
Subjt:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE

Query:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
        MDGGDWKTKRKESEN GDWMCCVCME SKGAAFIPCGHTFCR+  R++
Subjt:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

XP_023531397.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo]1.0e-6383.89Show/hide
Query:  MERPNRGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFE
        MERPNRG+RWANLKQRLGL KGMGCCGGSWS TSSTLTMI+G  LSRHGSSRS R+DG RSSA SGMNLAMALAAERNL T+EGGPT  G+VKSLMRLFE
Subjt:  MERPNRGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFE

Query:  EMDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
        E+DGGDWKT+RKESENNGDW+CCVCME SKGAAFIPCGHTFCR+  R++
Subjt:  EMDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

TrEMBL top hitse value%identityAlignment
A0A0A0KEL6 RING-type domain-containing protein6.7e-6987.84Show/hide
Query:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
        MER NR RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEGFSLS HGSSRSQ EDG RSSA SGMNLAMALAAERNLR DEGGPTG  DVKSLMRLFEE
Subjt:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE

Query:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
        MDGGDWKTKRKESENNGDWMCCVCME SKGAAFIPCGHTFCR+  R++
Subjt:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

A0A5A7V0I3 Zf-C3HC4_3 domain-containing protein1.4e-7190.54Show/hide
Query:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
        MER NRGRRWANLKQRLGLKGMGCC GSWSPTSSTLTMIEGFSLS HGSSRSQREDG RSSA SGMNLAMALAAERNLR+DEGGPTGA DVKSLMRLFEE
Subjt:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE

Query:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
        MDGGDWKTKRKE ENNGDWMCCVCME SKGAAFIPCGHTFCR+  R++
Subjt:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

A0A6J1GME5 RNA-binding protein MEX3B-like6.5e-7291.22Show/hide
Query:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
        MER N GRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEG SLSRHGSSRS REDGARSSA SG+NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
Subjt:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE

Query:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
        MDGGDWKTKRKESEN GDWMCCVCME SKGAAFIPCGHTFCR+  R++
Subjt:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

A0A6J1HXI8 RNA-binding protein MEX3B-like6.5e-7291.22Show/hide
Query:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
        MER N GRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEG SLSRHGSSRS REDGARSSA SG+NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE
Subjt:  MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEE

Query:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
        MDGGDWKTKRKESEN GDWMCCVCME SKGAAFIPCGHTFCR+  R++
Subjt:  MDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

A0A6J1JM70 RING finger protein 141-like1.5e-6382.12Show/hide
Query:  MERPNRGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFE
        MERPNRG+RWANLKQRLGL KGMGCCGG+WS TSSTLTMI+G  LSRHGSSRS R+DG RSSA SGMNLAMALAAERNL T+EGGPT  G+VKSLMRLFE
Subjt:  MERPNRGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFE

Query:  EMDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKVTM
        E+DGGDWKT+RKESENNGDW+CCVCME SKGAAFIPCGHTFCR+  R++ +
Subjt:  EMDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKVTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G62370.1 RING/U-box superfamily protein2.6e-1235.48Show/hide
Query:  RWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQRED----------GARSSAV---SGMNLAMALAAERNLRTDEGGPTGAGDVKSLM
        +W  LKQRL    +GCCG    P +  L   E   +        + ++          G     +   S  NLA ALA ER     E     A     LM
Subjt:  RWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQRED----------GARSSAV---SGMNLAMALAAERNLRTDEGGPTGAGDVKSLM

Query:  RLFEEMDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKVTM
        RL  E DG D  T    +    D +CCVCM   KGAAFIPCGHT+CR+  R++ M
Subjt:  RLFEEMDGGDWKTKRKESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKVTM

AT3G25030.1 RING/U-box superfamily protein1.4e-1034.88Show/hide
Query:  MERPNRGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIE---------GFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTG
        M+R +R  R    W +L+++L LK  G    S +   S  T I          GF LS  G+   +      SS    + L   LA ER L   E     
Subjt:  MERPNRGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIE---------GFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTG

Query:  AGDVK----SLMRLFEEMDGG-DWKTKRKESENN------GDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
          +V+    SLM L EE +G   + +   E+E         +  CCVCM  SKGAAFIPCGHTFCRL  R++
Subjt:  AGDVK----SLMRLFEEMDGG-DWKTKRKESENN------GDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

AT3G25030.2 RING/U-box superfamily protein1.4e-1034.88Show/hide
Query:  MERPNRGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIE---------GFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTG
        M+R +R  R    W +L+++L LK  G    S +   S  T I          GF LS  G+   +      SS    + L   LA ER L   E     
Subjt:  MERPNRGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIE---------GFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTG

Query:  AGDVK----SLMRLFEEMDGG-DWKTKRKESENN------GDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
          +V+    SLM L EE +G   + +   E+E         +  CCVCM  SKGAAFIPCGHTFCRL  R++
Subjt:  AGDVK----SLMRLFEEMDGG-DWKTKRKESENN------GDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

AT4G03965.1 RING/U-box superfamily protein2.4e-1842.95Show/hide
Query:  RRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSR-SQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGA-GDVK-SLMRLFEEMDGG
        RR   LK+RLG K +GCCG +W      LT   G        +R     D        GMNLA ALAAERN RT+E   +G+   +K SLMRL EE    
Subjt:  RRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSR-SQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGA-GDVK-SLMRLFEEMDGG

Query:  DWKTKRKESEN------------NGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
            +  E+E             N D +CCVCM   KGAAFIPCGHTFCR+  R+V
Subjt:  DWKTKRKESEN------------NGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV

AT4G22250.1 RING/U-box superfamily protein9.4e-1537.82Show/hide
Query:  RRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDG----ARSSAVSGMNLAMALAAERNLR--TDEGGPTGAGDVKSLMRLFEEM
        RR   LK+RL  K +GCCG +W+   +  T +   +         Q E G    +   + +GMNLA AL AER  R  + E          SLMRL EE 
Subjt:  RRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDG----ARSSAVSGMNLAMALAAERNLR--TDEGGPTGAGDVKSLMRLFEEM

Query:  DGGDWKTKRKESE---------NNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV
                 KE+E            D +CCVCM   KGAAFIPCGHTFCR+  R++
Subjt:  DGGDWKTKRKESE---------NNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCGGCCAAATCGAGGGCGGAGATGGGCTAATTTGAAGCAACGGCTAGGATTGAAAGGGATGGGATGCTGTGGAGGTTCATGGAGTCCGACGTCATCAACTTTGAC
GATGATTGAAGGCTTTAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCAAAGAGAAGATGGGGCTCGGAGCTCTGCAGTTTCCGGTATGAACTTGGCGATGGCTCTGGCAG
CGGAGAGAAATTTGAGGACTGATGAAGGAGGCCCCACCGGCGCCGGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGA
AAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAGGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGCTAATCGATCGGAA
GGTAACGATGGGAGTTGTTATGAGTGTGATGGGAGTTGTTATGAGTGTGATAGATGATGGAATGAAGGAAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCGGCCAAATCGAGGGCGGAGATGGGCTAATTTGAAGCAACGGCTAGGATTGAAAGGGATGGGATGCTGTGGAGGTTCATGGAGTCCGACGTCATCAACTTTGAC
GATGATTGAAGGCTTTAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCAAAGAGAAGATGGGGCTCGGAGCTCTGCAGTTTCCGGTATGAACTTGGCGATGGCTCTGGCAG
CGGAGAGAAATTTGAGGACTGATGAAGGAGGCCCCACCGGCGCCGGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGA
AAGGAAAGTGAGAATAACGGTGATTGGATGTGCTGCGTGTGCATGGAAGGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGCTAATCGATCGGAA
GGTAACGATGGGAGTTGTTATGAGTGTGATGGGAGTTGTTATGAGTGTGATAGATGATGGAATGAAGGAAGGTTGA
Protein sequenceShow/hide protein sequence
MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSQREDGARSSAVSGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKR
KESENNGDWMCCVCMEGSKGAAFIPCGHTFCRLIDRKVTMGVVMSVMGVVMSVIDDGMKEG