; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi11G016770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G016770
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSmall ubiquitin-related modifier
Genome locationchr11:24999545..25000453
RNA-Seq ExpressionLsi11G016770
SyntenyLsi11G016770
Gene Ontology termsGO:0016925 - protein sumoylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031386 - protein tag (molecular function)
GO:0044389 - ubiquitin-like protein ligase binding (molecular function)
InterPro domainsIPR022617 - Rad60/SUMO-like domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061648.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa]6.3e-3881.9Show/hide
Query:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG
        MST++NN SDEETTRK EPKP+SEYVNLKVNGQDGSEVYFRI K+++L KLM SYCKRQ LE  TIAFL+DGHPIAGTQTAEE L +EDGDEIDAMKHH 
Subjt:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG

Query:  GGGGG
        GGGGG
Subjt:  GGGGG

XP_022969393.1 small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima]1.4e-3476.64Show/hide
Query:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG
        MST + +++ E  TRKPE +P + YVN+KVNGQDGSEVYFRI KRTQL KLMK YCKRQ LELRTIAFLLDGH IAG QTA+E L MEDGDEIDAMKHHG
Subjt:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG

Query:  GGGGGGQ
        GGGGGG+
Subjt:  GGGGGGQ

XP_031743856.1 small ubiquitin-related modifier 1-like [Cucumis sativus]1.2e-3678.3Show/hide
Query:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG
        MST +NN  DEETTRK +PKP+SEYVNLKVNGQDGS+VYFRIFK+T++ KLM SYC+RQ LE  TIAFL+DGHPIAGTQTAEE L +EDGDEIDAMKHH 
Subjt:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG

Query:  GGGGGG
        GGGG G
Subjt:  GGGGGG

XP_038888534.1 small ubiquitin-related modifier 1-like isoform X1 [Benincasa hispida]6.5e-4391.43Show/hide
Query:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG
        MS A  NDSDEET RKPE KPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGH IAGTQTAEE LEMEDGDEIDAMKHHG
Subjt:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG

Query:  GGGGG
        GG  G
Subjt:  GGGGG

XP_038888535.1 small ubiquitin-related modifier 1-like isoform X2 [Benincasa hispida]9.6e-3987.62Show/hide
Query:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG
        MS A  NDSDEET RKPE KPDSEYVNLK    DGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGH IAGTQTAEE LEMEDGDEIDAMKHHG
Subjt:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG

Query:  GGGGG
        GG  G
Subjt:  GGGGG

TrEMBL top hitse value%identityAlignment
A0A5A7V249 Small ubiquitin-related modifier 13.0e-3881.9Show/hide
Query:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG
        MST++NN SDEETTRK EPKP+SEYVNLKVNGQDGSEVYFRI K+++L KLM SYCKRQ LE  TIAFL+DGHPIAGTQTAEE L +EDGDEIDAMKHH 
Subjt:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG

Query:  GGGGG
        GGGGG
Subjt:  GGGGG

A0A6J1D1W9 small ubiquitin-related modifier 1-like1.0e-3072.45Show/hide
Query:  EETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGGGGGQG
        EE+TRKPE +PD EYVN+KVNGQDGSEVYFR+ K+TQLKKLM SYC+RQG + R +AFLLDGH I G QT E+ LE++DGDEIDAM HHGGGGG   G
Subjt:  EETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGGGGGQG

A0A6J1GLF8 Small ubiquitin-related modifier7.2e-3274.53Show/hide
Query:  MSTAVNNDSDEETTRKPEPKP-DSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHH
        MST + +++ E   RKPE +P +  YVN+KVNGQDGSEVYFRI KRTQL KLMK+YCKRQ LELRTIAFLLDGH IAG QTA+E L MEDGD+IDAMKHH
Subjt:  MSTAVNNDSDEETTRKPEPKP-DSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHH

Query:  GGGGGG
        GGGGGG
Subjt:  GGGGGG

A0A6J1HW85 small ubiquitin-related modifier 1-like isoform X16.5e-2570.45Show/hide
Query:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEME
        MST + +++ E  TRKPE +P + YVN+KVNGQDGSEVYFRI KRTQL KLMK YCKRQ LELRTIAFLLDGH IAG QTA+E++  E
Subjt:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEME

A0A6J1I0U8 small ubiquitin-related modifier 1-like isoform X27.0e-3576.64Show/hide
Query:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG
        MST + +++ E  TRKPE +P + YVN+KVNGQDGSEVYFRI KRTQL KLMK YCKRQ LELRTIAFLLDGH IAG QTA+E L MEDGDEIDAMKHHG
Subjt:  MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHG

Query:  GGGGGGQ
        GGGGGG+
Subjt:  GGGGGGQ

SwissProt top hitse value%identityAlignment
O13351 Ubiquitin-like protein pmt3/smt33.1e-1649.44Show/hide
Query:  TRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG
        T + + KP +E++NLKV GQD +EV+F+I K T+  KLMK YC RQG  + ++ FL+DG  I   QT  E L+MEDGD+I+A+    GG
Subjt:  TRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG

P55852 Small ubiquitin-related modifier 19.4e-2156.52Show/hide
Query:  EPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGGGGGQGA
        +P     ++NLKV GQDG+EV+FRI + TQLKKLM +YC RQ +++ +IAFL DG  +   QT +E L+MEDGDEIDAM H  GG GGG  A
Subjt:  EPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGGGGGQGA

P55857 Small ubiquitin-related modifier 14.7e-2055.43Show/hide
Query:  EETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG
        EE  +    +    ++NLKV GQDG+EV+FRI + TQLKKLM +YC RQ +++  IAFL DG  + G QT +E LEMEDGDEIDAM H  GG
Subjt:  EETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG

Q6DI05 Small ubiquitin-related modifier 35.4e-1653.01Show/hide
Query:  KPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG
        K +++++NLKV GQDGS V F+I + T L KLMK+YC+RQGL +R I F  DG PI  T T  + LEMED D ID  +   GG
Subjt:  KPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG

Q9FLP6 Small ubiquitin-related modifier 27.2e-2158.24Show/hide
Query:  TRKPEPKPD-SEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGG
        T + + KPD   ++NLKV GQDG+EV+FRI + TQLKKLM +YC RQ ++  +IAFL DG  +   QT +E LEMEDGDEIDAM H  GGG
Subjt:  TRKPEPKPD-SEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGG

Arabidopsis top hitse value%identityAlignment
AT4G26840.1 small ubiquitin-like modifier 16.7e-2256.52Show/hide
Query:  EPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGGGGGQGA
        +P     ++NLKV GQDG+EV+FRI + TQLKKLM +YC RQ +++ +IAFL DG  +   QT +E L+MEDGDEIDAM H  GG GGG  A
Subjt:  EPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGGGGGQGA

AT5G55160.1 small ubiquitin-like modifier 25.1e-2258.24Show/hide
Query:  TRKPEPKPD-SEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGG
        T + + KPD   ++NLKV GQDG+EV+FRI + TQLKKLM +YC RQ ++  +IAFL DG  +   QT +E LEMEDGDEIDAM H  GGG
Subjt:  TRKPEPKPD-SEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGG

AT5G55160.2 small ubiquitin-like modifier 23.1e-1950.96Show/hide
Query:  TRKPEPKPD-SEYVNLKVNGQ-------------DGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHH
        T + + KPD   ++NLKV GQ             DG+EV+FRI + TQLKKLM +YC RQ ++  +IAFL DG  +   QT +E LEMEDGDEIDAM H 
Subjt:  TRKPEPKPD-SEYVNLKVNGQ-------------DGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHH

Query:  GGGG
         GGG
Subjt:  GGGG

AT5G55170.1 small ubiquitin-like modifier 31.1e-1348.28Show/hide
Query:  KPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG
        KP  +    +V LKV  QDG EV F+  K   LKKLM  YC R+GL+L   AF+ +G  I G +T +E L+MEDGD IDA +   GG
Subjt:  KPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG

AT5G55856.1 Ubiquitin-like superfamily protein4.5e-1041.18Show/hide
Query:  EPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG
        +P   S ++ +KV  QD   VYFRI +  +L+K+M +Y  + G+E+ T+ FL DG+ I   QT  E L +ED DEI+A     GG
Subjt:  EPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACAGCGGTGAACAACGACAGTGATGAAGAAACAACCCGAAAACCCGAACCAAAACCCGATTCGGAGTATGTCAACCTCAAGGTCAATGGACAGGATGGGAGTGA
AGTGTATTTCAGGATATTTAAGAGAACCCAACTCAAGAAACTTATGAAATCGTACTGTAAACGACAAGGGTTAGAGCTAAGAACCATTGCGTTTCTCTTGGACGGCCATC
CCATTGCCGGAACTCAAACGGCCGAAGAGATTCTGGAGATGGAGGATGGGGATGAAATTGATGCTATGAAACACCACGGCGGAGGCGGCGGCGGCGGCCAAGGAGCAATT
TGA
mRNA sequenceShow/hide mRNA sequence
CTTTAACGCAACCCAACGCCTGAAAAAATGAAAGAGCAAAACAGAGCTTCTCTTGTTCATACTCTCTCTTTCGTTGAGATTCAGAAATTTGAACATTAAAAATGTCGACA
GCGGTGAACAACGACAGTGATGAAGAAACAACCCGAAAACCCGAACCAAAACCCGATTCGGAGTATGTCAACCTCAAGGTCAATGGACAGGATGGGAGTGAAGTGTATTT
CAGGATATTTAAGAGAACCCAACTCAAGAAACTTATGAAATCGTACTGTAAACGACAAGGGTTAGAGCTAAGAACCATTGCGTTTCTCTTGGACGGCCATCCCATTGCCG
GAACTCAAACGGCCGAAGAGATTCTGGAGATGGAGGATGGGGATGAAATTGATGCTATGAAACACCACGGCGGAGGCGGCGGCGGCGGCCAAGGAGCAATTTGAATCTTT
GGAAAATGGTGATCCGTTGGGTTTTGTCAACGATGACGTTCGGATCTTTTTTTTCCTTTTTGTTGTGGCTGTGATGGATGTCACGGGACAGCTGCAATTGTATTTTCTTT
GTGTACATATTAAGCCTTTAATTACACTTTACGGTTTGTTTAATATTAGCATTTTCTTTAATATATATATATATATATATATGTATATATATGTATTTATGTATAGGACA
GTTATATATTTAATGAAAGAAAATATTGTTTAAAAA
Protein sequenceShow/hide protein sequence
MSTAVNNDSDEETTRKPEPKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGLELRTIAFLLDGHPIAGTQTAEEILEMEDGDEIDAMKHHGGGGGGGQGAI